Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A21
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   3.9  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   9.0  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   9.0  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 HANFKIKIFLLININFVRK 379
           HAN + K   L+NINFVRK
Sbjct: 569 HANARTKKKELLNINFVRK 587


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 72  SFCLXLAPTLSKNHLHXSXQRGHVFCTQTMADFSSDMSKLTAVNSCHSPMNFDHEF 239
           SFC  LAP+LS  +L    +         + +F   +  L +V S  +P+ F H F
Sbjct: 153 SFCENLAPSLSTKNLEKYEK-----IVLALLNFDIYVISLPSVESFLTPLIFQHVF 203


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 222 NFDHEF*SVLFSVDTEI*QRLVRCF*KKINHLQVMQILK*K 344
           N +H+    LF +DT    R+ +   KKI  L+V QIL+ K
Sbjct: 48  NVEHKPNDALFVIDTLGDDRIAKRSRKKIKPLKVDQILENK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,606
Number of Sequences: 5004
Number of extensions: 37008
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)