Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   4.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   7.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.1  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 146 LLKYLKFFHSQFCQQN*MCKKSFCWLTVYFHVIILXIYKAVVS 18
           L+ Y  +F S  C  + +    FC +T+  +      YKA +S
Sbjct: 273 LMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNMSYKAKLS 315


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 174 HTVDENQFLIVEVFKVFSFS 115
           + +DEN+FLI  VF+ F+++
Sbjct: 520 YLMDENKFLINSVFRYFNYT 539


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = +3

Query: 108  AKLRMKKL*ILQQLKTDSHPLYVSCIPQQK*FLLITLN-KSPYIYYFVLFIFHSKLLSLF 284
            A LR K L I+ Q+KT   P  +   P+    ++   N +S  +   VL +  + +++  
Sbjct: 789  ASLRTKCLRIINQMKTI--PSILRTHPEVLAQIISKSNDQSAIVRDTVLDLLGTYIMAYR 846

Query: 285  ETVVRIQLLNLYYI*IMPNLEIVKCTAIKKLCITDQRIRQMDVRVSTHGK 434
            ET+   Q+       I     IV+  AIK+LC   +    +++RV    K
Sbjct: 847  ETIP--QIYGCIISGISDPSTIVRKRAIKQLCEVYEATEDLNIRVDIASK 894


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,934
Number of Sequences: 5004
Number of extensions: 50979
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)