Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A20
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    28   5.5  
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302...    28   7.3  
07_03_0293 + 16321539-16321893,16322020-16322207,16322881-163229...    27   9.7  

>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
            11974177-11974211
          Length = 1581

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 342  LEIVKCTAIKKLCITDQRIRQ 404
            L++  CTA++KLC+ D R+ Q
Sbjct: 1278 LDLSSCTALEKLCVIDCRLLQ 1298


>11_01_0401 -
           3020606-3020932,3021480-3021626,3021711-3021878,
           3021960-3022218,3024469-3024522,3025200-3025375
          Length = 376

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 228 GIYSKLLIEIIFVEEYMIHTVDENQFLIVEVFKVFSFSIL 109
           GI+  ++I++   + Y +    +   + + +FK+FSF IL
Sbjct: 140 GIFCFVMIKVSRDDNYTMKEAQKQSIMALVIFKIFSFIIL 179


>07_03_0293 +
           16321539-16321893,16322020-16322207,16322881-16322904,
           16323497-16323550,16323854-16323944,16324715-16324815,
           16324949-16324999,16326626-16326754,16327772-16327834,
           16327928-16328171,16329628-16329776,16329855-16329944,
           16330343-16330477,16330579-16330635,16331079-16331135,
           16332299-16332336,16332532-16332601,16332971-16333207
          Length = 710

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 77  KKIFYTFNFAGKIENEKTLNTSTIKN*FSSTVCIMYS-STKIISINNFE*IPIHILFCTF 253
           K +F+  +  G++    T +  T+K+  + T+CI+++ ST++  +     + + +L   F
Sbjct: 181 KMVFFDRHKVGELTGLLTSDLGTLKSVITGTLCILFTLSTELAPVLGLLMVSVSVLVALF 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,759
Number of Sequences: 37544
Number of extensions: 227861
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)