Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A20
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    31   0.53 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 219 NKSPYIYYFVLFIFHSKLLSLFETVVRIQLLNLYYI*IMPNLEIVKCTAIKKLCITDQRI 398
           N  P + Y  +   + K L     + ++ +LNL Y+    + +I++   +KKL I D   
Sbjct: 178 NNFPNLTYLDISETNIKSLDGISKLQKLYILNLRYLKFSAHTDIIELFELKKLQILDVSS 237

Query: 399 RQMDVRVST 425
           RQ+ +   T
Sbjct: 238 RQISIATPT 246


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -2

Query: 610  QITDVTVLFVKFLNEQNQE----SCHNVSVNMRNTIKYNIIYDSSSFTNKL 470
            Q+  +T +  +F N++ +      CH     + +TI+ N +  + SF NKL
Sbjct: 5591 QLKCMTDVLARFTNKEKERISFVECHATGTTLGDTIEMNSLRTAYSFKNKL 5641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,882
Number of Sequences: 27780
Number of extensions: 275180
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)