Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A20
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 238 IILYFLFFIQNYYHYLRQ*SEY 303
           II+Y  F I  Y   LR  SEY
Sbjct: 413 IIMYIAFIILQYAGLLRNRSEY 434


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 224 IPIHILFCTFYFSFKII 274
           IPI +LF  F+ SF+ I
Sbjct: 231 IPIMLLFLAFFVSFRKI 247


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 77  CWLTVYFHVII 45
           CW+ VY+ VI+
Sbjct: 71  CWMNVYYIVIL 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,423
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)