Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A19
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    20   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.4  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 173 GSCMGEIAELVPALP*GLERPETRPIERRKRRIC*TCCLFRVSTSTE 313
           G C  + AEL   LP  LE  E  P   ++++I      F +    E
Sbjct: 54  GPCTPDAAELKRNLPDALEN-ECSPCSEKQKKIADKVVQFLIDNKPE 99


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 173 GSCMGEIAELVPALP*GLERPETRPIERRKRRIC*TCCLFRVSTSTE 313
           G C  + AEL   LP  LE  E  P   ++++I      F +    E
Sbjct: 54  GPCTPDAAELKRNLPDALEN-ECSPCSEKQKKIADKVVQFLIDNKPE 99


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 307 TCTYSKQTTCSTNSSFSSLYWPCL 236
           TC      T +  SS  S Y PC+
Sbjct: 183 TCALDLTPTYAVVSSSISFYVPCI 206


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 180 VWEKLRSWFRR 212
           V EKLR+WF +
Sbjct: 183 VHEKLRNWFSK 193


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 216  GSAGTSSAISPIHE 175
            G++ TSS ISP+ E
Sbjct: 1821 GTSSTSSDISPMSE 1834


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 216  GSAGTSSAISPIHE 175
            G++ TSS ISP+ E
Sbjct: 1817 GTSSTSSDISPMSE 1830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,912
Number of Sequences: 438
Number of extensions: 1297
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)