Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A19
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    27   4.2  
At1g79110.2 68414.m09225 expressed protein                             26   5.6  
At1g79110.1 68414.m09224 expressed protein                             26   5.6  
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-...    25   9.7  
At1g23870.1 68414.m03011 glycosyl transferase family 20 protein ...    25   9.7  

>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
          subunit, putative similar to component of chloroplast
          outer membrane translocon Toc64 [Pisum sativum]
          GI:7453538; contains Pfam profiles PF01425: Amidase,
          PF00515: TPR Domain
          Length = 603

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 70 LITFVKKRRFRAISPNDFCAFLD 2
          ++   +KRR RA+   DF AFLD
Sbjct: 30 ILAETRKRRIRALREEDFGAFLD 52


>At1g79110.2 68414.m09225 expressed protein
          Length = 355

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 221 GLERPETRPIERRKRRIC*TC 283
           GLER      ERR+RR+C  C
Sbjct: 290 GLEREAQDKAERRRRRMCRNC 310


>At1g79110.1 68414.m09224 expressed protein
          Length = 358

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 221 GLERPETRPIERRKRRIC*TC 283
           GLER      ERR+RR+C  C
Sbjct: 293 GLEREAQDKAERRRRRMCRNC 313


>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
           [Zea mays] EMBL:X58573
          Length = 237

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 283 LFVSSKYKY*IIIGRPN 333
           +F+   +KY IIIGRPN
Sbjct: 189 VFLDEVFKYEIIIGRPN 205


>At1g23870.1 68414.m03011 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 867

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 165 VVQARVWEKLRSWFRRCLRVWSGQRHG 245
           VV  R WE L  W   C  +     HG
Sbjct: 633 VVSGRGWESLSDWLSPCENLGIAAEHG 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,325,624
Number of Sequences: 28952
Number of extensions: 94817
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)