Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A18
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   1.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   6.4  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    25   6.4  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.5  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 453 LPSRQKYAKHASQLVSNQVWKVPRLPRTIVQSHFDNETANHYISP 319
           +PS +K + +A++   N V ++  L  TI Q   +NE  N  +SP
Sbjct: 369 VPSDEKLSNYAAEK-ENLVSRISELEHTIEQLTINNERDNERMSP 412


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 286 YSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRA 143
           Y+   ++  +WS  +   +TP  SA     F T YP      +S + A
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPA 163


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = -1

Query: 507  KGSLAVECVSVR---VWKVPRLPSRQKYAKHASQLVSNQVW----KVPRLPRTIVQSHFD 349
            KG  A++   +R   + K+P LPSR K+            W    +V + P+TI + H +
Sbjct: 1206 KGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEE 1265

Query: 348  NETANHYISPRRCGDRRM 295
             E        +R    RM
Sbjct: 1266 AERKKALAESQRPSSGRM 1283


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 462 VPRLPSRQKYAKHASQLVSNQVWKVPRLPRTIVQS 358
           V RLP RQ  A H+ Q   N     P L R I  S
Sbjct: 138 VSRLPQRQSSASHSEQPTINLKKVGPILERLIASS 172


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  SLFPRSLFIRRLTKVNPIPPC 95
           S F ++LF+     V P+PPC
Sbjct: 336 SKFVQNLFVSNTVPVPPLPPC 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,670
Number of Sequences: 5004
Number of extensions: 56646
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)