Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A18
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1620 + 38697960-38698131,38698532-38700732 29 2.1
10_08_0020 - 14196770-14197174,14198856-14198933 28 5.0
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 5.0
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 28 6.5
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 28 6.5
01_06_1218 - 35489224-35489408,35489497-35489626 28 6.5
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 27 8.7
08_02_1071 + 24110007-24110492 27 8.7
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 8.7
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 27 8.7
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 327 YNDLQFHCRNDSERLSWGAWG 389
YN+LQF RN SERL G++G
Sbjct: 488 YNELQFLTRNFSERLGVGSFG 508
>10_08_0020 - 14196770-14197174,14198856-14198933
Length = 160
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -3
Query: 238 LSTTPSYSAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTPPLPLTSLQGGIGFTFVNLR 59
++ P+ +A G + P C PP A + P+ L P P S G+T+V L
Sbjct: 1 MADPPATAAGGSSGGSSLPPTCLPPAACSWFGSNPVKPLNQPRPNRS----AGYTWVGLG 56
Query: 58 MKSERGNKLNY 26
R N++ Y
Sbjct: 57 YSKTRLNRIKY 67
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 449 GSLGTFHTLTDTHSTAKLPLIKHACRSTLEDHGHSC 556
GSLG+F T T + + + I+H+CR L+ C
Sbjct: 423 GSLGSFALATSTMAQSAIIRIEHSCRFLLQSKCLRC 458
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 467 GKSPGSPAGRSMQSMHLN*SATRCGKSPGSPGQSFRVIST 348
G+ PGSP R S + S + PGSP S RV+S+
Sbjct: 207 GQCPGSPTARQDDSRSSS-SPHPLPRPPGSPCSSSRVVSS 245
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 245 HNAKYDSKLFRKRVENLHYVL 183
HNAK+ ++++RK E HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301
>01_06_1218 - 35489224-35489408,35489497-35489626
Length = 104
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 515 HACRSTLEDHGHSCFLCEW 571
H CR T +DHG+ C+W
Sbjct: 69 HKCRETCQDHGNVDGRCKW 87
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 393 KVPRLPRTIVQSHFDNETANHYISPR 316
KV R PR QSHFD T ++SPR
Sbjct: 132 KVSRQPRR--QSHFDLHTDQRHLSPR 155
>08_02_1071 + 24110007-24110492
Length = 161
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 449 GSLGTFHTLTDTHSTAKLPLIKHACRSTLEDHGHSC 556
GSLG+F T T + + ++H+CR L+ C
Sbjct: 107 GSLGSFALATSTMAQRAIIRVEHSCRFLLQSKCPRC 142
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -1
Query: 396 WKVPRLPRTIVQSHFD---NETANHYISPRRCGDRRMRSPIRRYQ 271
++ P R+ V+S ++ N+ NH+ R G RSP+RRY+
Sbjct: 416 YRTPSPERSPVRSRYNDGRNDRWNHFNRYGRNGPYGARSPVRRYR 460
>05_01_0128 +
866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 160 ASPFRAFWPMIRLTPPLPLTSLQGGIGFTFVNLRMKSERGNKLNYDVYI 14
+S R W ++LTPPLP+T I N+ +K + G ++ I
Sbjct: 665 SSKERMGWTELKLTPPLPVTKEDTSI-HNQDNIVLKDQEGRNQQVEIDI 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,171
Number of Sequences: 37544
Number of extensions: 408497
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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