Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A18
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.4
At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing pr... 30 1.4
At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing pr... 30 1.4
At1g44920.1 68414.m05147 expressed protein 29 1.8
At5g50290.1 68418.m06227 hypothetical protein 28 5.5
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 28 5.5
At2g29910.2 68415.m03633 F-box family protein contains F-box dom... 28 5.5
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 28 5.5
At2g17770.1 68415.m02058 ABA-responsive element binding protein,... 27 7.2
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 27 9.6
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ... 27 9.6
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ... 27 9.6
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ... 27 9.6
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 236 KYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 120
K + KL+ + ++P P IG + GI AYD +H
Sbjct: 5 KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSH 43
>At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 546 P*SSRVDLQACLIKGSLAVECVSVRVWKVPRLPSRQKYAKHASQLVSN 403
P SSR C G+ V+C S W++ +PS QKY + QL+ N
Sbjct: 46 PLSSRTQ---CPSIGAFTVQCASCFKWRL--MPSMQKYEEIREQLLEN 88
>At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 546 P*SSRVDLQACLIKGSLAVECVSVRVWKVPRLPSRQKYAKHASQLVSN 403
P SSR C G+ V+C S W++ +PS QKY + QL+ N
Sbjct: 46 PLSSRTQ---CPSIGAFTVQCASCFKWRL--MPSMQKYEEIREQLLEN 88
>At1g44920.1 68414.m05147 expressed protein
Length = 258
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 152 IQGILAYDKTHTTASANITTRWNRI 78
++G++ +DK +T+S+NI T+W R+
Sbjct: 86 LEGVIQFDKPSSTSSSNI-TKWGRV 109
>At5g50290.1 68418.m06227 hypothetical protein
Length = 335
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 119 CESYHRPECPEWTCQWWMAPGVERNEGSQPFCGI 220
CE Y CP W + PG+ G CG+
Sbjct: 148 CEEYM--SCPAWDMVGYRQPGIHSGSGPPMCCGV 179
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens]
GI:4337460
Length = 2376
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 528 DLQ-ACLIKGSLAVECVSVRVWKVPRLPSRQKYAKHASQLVSNQ 400
DLQ +CL S+ + ++ R PS ++KHAS VS Q
Sbjct: 165 DLQPSCLCSFSILTSDGRIHHVEISREPSASAFSKHASNSVSKQ 208
>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 335
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 262 LLILVPTNR*PHSTITTAARTNIMICSFIVEMTLNDCPGEPGDFPHLV 405
+L L+PT R ST + R N + + + ++ +ND G PG FP +
Sbjct: 18 VLSLLPTKR-AASTAVLSKRWN-NLPALVDKLDINDAIGGPGGFPEFI 63
>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 262 LLILVPTNR*PHSTITTAARTNIMICSFIVEMTLNDCPGEPGDFPHLV 405
+L L+PT R ST + R N + + + ++ +ND G PG FP +
Sbjct: 18 VLSLLPTKR-AASTAVLSKRWN-NLPALVDKLDINDAIGGPGGFPEFI 63
>At2g17770.1 68415.m02058 ABA-responsive element binding protein,
putative similar to ABA response element binding factor
[Triticum aestivum] gi|21693583|gb|AAM75354
Length = 156
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 169 PPLASPF-RAFWPMIRLTPPLPLTSLQGGIGFTFVN 65
PP +S A + + L PP + SL G+GF F++
Sbjct: 54 PPSSSTIVTALYGSLPLPPPATVLSLNSGVGFEFLD 89
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 179 QVPSTIGKSIQGILAYDKTHTTASANITTRWNRIHFRQSPYEE 51
Q P I K +G Y AS NIT W+ + ++P+ +
Sbjct: 48 QFPGPIIKVHKGDTIYVNVQNRASENITMHWHGVEQPRNPWSD 90
>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 453
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 399 VWKVPRLPRTIVQSHFDNETAN 334
VWK+PRLP I+Q H D+ +
Sbjct: 381 VWKLPRLPNLIMQ-HVDHSAGD 401
>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 399 VWKVPRLPRTIVQSHFDNETAN 334
VWK+PRLP I+Q H D+ +
Sbjct: 395 VWKLPRLPNLIMQ-HVDHSAGD 415
>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 399 VWKVPRLPRTIVQSHFDNETAN 334
VWK+PRLP I+Q H D+ +
Sbjct: 395 VWKLPRLPNLIMQ-HVDHSAGD 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,075
Number of Sequences: 28952
Number of extensions: 310591
Number of successful extensions: 757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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