Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A15
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125457-1|AAD12831.1|  108|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF125457-1|AAD12831.1|  108|Caenorhabditis elegans Hypothetical
           protein Y50F7A.2 protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 224 FKQMFSYFNRIFN-MGQQVIVLFQNTATFNKKFEKYPRY 111
           F+ +F YF ++ N + +   ++ +N   F +K EKYP+Y
Sbjct: 71  FQNIFPYFLKLLNYVSENATLMLEN---FFEKLEKYPKY 106


>Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC455.9 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 501 FQIIRF*NVCISIVVIIRYSKKNKSSFSHFALFH 400
           +QI  F ++C SI V I Y   + S  S F LFH
Sbjct: 48  YQIRFFVDICYSIAVSIYYVALDISYLSPFFLFH 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,082
Number of Sequences: 27780
Number of extensions: 270671
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)