Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A13
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    35   0.011
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    33   0.025
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    26   3.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   6.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.5  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   6.5  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   6.5  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -1

Query: 611 SMPTFVFVKNGKKLDEFSGANVDKL 537
           +MPTFVF +NGK++D  +GAN   L
Sbjct: 74  AMPTFVFFENGKQIDMLTGANPQAL 98


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTI 525
           +MP+F   KNG+K++E  GAN  KL  +I
Sbjct: 71  AMPSFFLYKNGEKIEEIVGANPAKLEASI 99


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTI 525
           ++P FV +   K L   SGAN  KL   I
Sbjct: 73  AVPLFVLIHGAKVLARISGANPQKLKAAI 101


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 383 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 490
           N   ++TD +NIF +F+ N   + F    L  I  C
Sbjct: 76  NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 438 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 346
           + +N +K+  +S+  L  LIF VC  LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 453 KNMYTFLINEEKMFLTSVMNLK 388
           +N Y +L+NE+  FLTS+  +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 308 FYLLNCXITTGPIFFAFQRLQTLKINIFKF 397
           FYLL+  I T P+F       T  I+I K+
Sbjct: 46  FYLLHVRINTSPLFIKTTTRPTALIHITKY 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,162
Number of Sequences: 5004
Number of extensions: 44607
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)