Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A13
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 40 0.002
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 37 0.011
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 34 0.10
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 31 0.72
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 31 0.95
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 31 0.95
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 30 1.3
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 29 2.2
09_06_0265 + 21933913-21933993,21934108-21934404 29 2.9
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 29 2.9
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 29 2.9
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 29 2.9
12_01_1027 + 10529545-10529777,10530269-10530668 28 5.1
09_06_0119 - 20969450-20969643,20969767-20970088,20970147-209703... 28 5.1
04_04_0782 + 28038292-28038413,28038577-28038778,28039221-280392... 28 5.1
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 27 8.9
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
+MPTF+F+K+G + D+ GA D L TI+KH
Sbjct: 81 AMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -1
Query: 608 MPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
+PTF FVK+G+K+D+ GAN + L I +H
Sbjct: 1053 VPTFFFVKDGEKIDKIPGANKELLRAKIRRH 1083
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
S+P+F FV+NGK++D+ GA+ + L + +H
Sbjct: 712 SVPSFFFVRNGKEIDKVVGADKNGLERKVAQH 743
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKL 537
PTF F+KNG+++D+ GAN +L
Sbjct: 598 PTFFFLKNGEQVDKLVGANKPEL 620
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILK 519
++P FVF+K GK +D GAN L + K
Sbjct: 73 AVPYFVFLKEGKTVDTLEGANPASLANKVAK 103
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTI 525
S+PTF F G+K E GAN KL +T+
Sbjct: 154 SVPTFHFYYQGRKTGEVVGANATKLESTM 182
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKL 537
PTF F+KN K++D+ GAN +L
Sbjct: 99 PTFFFIKNEKQVDKLVGANKPEL 121
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTI 525
+MPTFV + G+++ GA+ D+L TI
Sbjct: 96 AMPTFVLARGGEEVGRIVGADKDELEKTI 124
>09_06_0265 + 21933913-21933993,21934108-21934404
Length = 125
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
++PTFV VK + + G N D L ++I KH
Sbjct: 80 ALPTFVLVKRHRAVARVVGVNRDDLHSSINKH 111
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
+MPTF+F+K G D GA D+L + + H
Sbjct: 87 AMPTFLFMKEGDVKDRVVGAMKDELASKLELH 118
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKL 537
PTF+F+KN +++D+ G N + L
Sbjct: 712 PTFIFMKNNEEIDKLVGGNHEDL 734
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 608 MPTFVFVKNGKKLDEFSGANVDKLXTTI 525
+PTF +K+GK + E +GA +D+L I
Sbjct: 154 VPTFKILKDGKVVKEVTGAKLDELIQAI 181
>12_01_1027 + 10529545-10529777,10530269-10530668
Length = 210
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 608 MPTFVFVKNGKKLDEFSGA 552
+PTF FVK G+K+D GA
Sbjct: 59 VPTFTFVKAGQKIDMIQGA 77
>09_06_0119 -
20969450-20969643,20969767-20970088,20970147-20970380,
20970659-20970789,20970874-20971147
Length = 384
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 365 LQTLKINIFKFITDVKNIFSSFIKNVYMFFFF 460
++ L+ +I ++ + N+ S F+KN++MF F
Sbjct: 190 VRPLQFDISSYVDFLANLASDFVKNLFMFSLF 221
>04_04_0782 +
28038292-28038413,28038577-28038778,28039221-28039246,
28039750-28039969
Length = 189
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
PTF F ++G+K+DE G ++L + H
Sbjct: 159 PTFHFYRDGEKVDEMLGTGEERLHDRLWLH 188
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 170 IIHLSNSDKNKKKTTIHTLKFLSTPLINKKPN*KY 274
I+ ++ D++K KT++H+ P+IN P+ Y
Sbjct: 496 IVFITLEDEDKNKTSVHSTVQTGPPVINPLPSDLY 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,068
Number of Sequences: 37544
Number of extensions: 224016
Number of successful extensions: 353
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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