Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A13
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     30   1.3  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           27   9.1  

>SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 445 HVFFFLIPFSFHRRLRTTLVSIY 513
           H+FFF +PFS H+ + TT++  Y
Sbjct: 192 HIFFFSLPFSHHQIIITTIIIKY 214


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILK 519
           +MPTF F KN  K+DE  GA+   L   I K
Sbjct: 80  AMPTFQFFKNKVKVDEVRGADPKALEDAIKK 110


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTI 525
           +MPTF F  N  K+DE  GA+   L   I
Sbjct: 81  AMPTFHFYHNKAKIDELRGADPGALENKI 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,667
Number of Sequences: 59808
Number of extensions: 286613
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)