Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A13
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 42 4e-04
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 40 0.002
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 35 0.037
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 35 0.049
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 33 0.11
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 33 0.11
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 33 0.15
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) i... 31 0.80
At3g53220.1 68416.m05864 thioredoxin family protein low similari... 29 1.8
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 29 3.2
At2g42005.1 68415.m05196 amino acid transporter family protein l... 28 4.2
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 28 5.6
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 27 7.4
At5g01370.1 68418.m00050 expressed protein 27 7.4
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 27 7.4
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 27 7.4
At1g07700.3 68414.m00829 thioredoxin family protein low similari... 27 7.4
At1g07700.1 68414.m00828 thioredoxin family protein low similari... 27 7.4
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 27 9.8
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 27 9.8
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
+MPTF+F+K GK LD+ GA D+L +TI KH
Sbjct: 81 AMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKHK*IET 501
+MPTFVF+K G+ +D+ GAN + L I+KH + T
Sbjct: 82 AMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTT 118
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 35.1 bits (77), Expect = 0.037
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
+MPTFVF+K G +D GA D++ ++KH
Sbjct: 80 AMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 34.7 bits (76), Expect = 0.049
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKHK 513
++P FVFVK G+++D GA D+L I +H+
Sbjct: 96 TLPAFVFVKRGEEIDRVVGAKPDELVKKIEQHR 128
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILK 519
+MPTFV VK GK+++ GA D+L + K
Sbjct: 100 AMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKL 537
+MPTF+F+K+G +D+ GAN D++
Sbjct: 77 AMPTFLFLKDGNAMDKLVGANPDEI 101
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
S+PTF F+++GK++D+ GA+ L I +H
Sbjct: 345 SVPTFCFIRDGKEVDKVVGADKGSLEQKIAQH 376
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1)
identical to SP|Q42403 Thioredoxin H-type 3 (TRX-H-3)
{Arabidopsis thaliana}; identical to cDNA (GIF1) mRNA
for thioredoxin GI:992961
Length = 118
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKHK 513
+MPTF+F+K G+ + GA +++ + KHK
Sbjct: 80 AMPTFIFMKEGEIKETVVGAAKEEIIANLEKHK 112
>At3g53220.1 68416.m05864 thioredoxin family protein low similarity
to SP|P29451 Thioredoxin [Rhesus macaque] {Macaca
mulatta}; contains Pfam profile: PF00085 Thioredoxin
Length = 126
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
PTF F ++G+K+DE GA +L + H
Sbjct: 96 PTFQFYRDGEKVDEMFGAGEQRLHDRLWLH 125
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 605 PTFVFVKNGKKLDEFSGANVDKL 537
PTF F+KNG+++ + GAN +L
Sbjct: 100 PTFFFLKNGQQIGKLVGANKPEL 122
>At2g42005.1 68415.m05196 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; contains Pfam profile PF01490:
Transmembrane amino acid transporter protein
Length = 413
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 140 LSYTXISIGEIIHLSNSDKNKKKTTIHTLKFLSTPLINKKPN*KYSWGC 286
LS +G +I + N+ N K T T L+ P Y WGC
Sbjct: 111 LSQAGFCVGYLIFIGNTLANLSKPTKSTTLMSLRHLMGVSPKSLYIWGC 159
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILK 519
++P FVF K+GK +D GA+ L + K
Sbjct: 74 AVPYFVFFKDGKTVDTLEGADPSSLANKVGK 104
>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
from [Nicotiana tabacum] GI:1064931, [Catharanthus
roseus] GI:2190259; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 355
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 155 ISIGEIIHLSNSDKNKKKTTIHTLKFLSTPLI 250
+ +GE+ +LSN K++K TT K +S P I
Sbjct: 36 VVLGELPNLSNIKKSRKATTKQKKKSVSIPTI 67
>At5g01370.1 68418.m00050 expressed protein
Length = 427
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 498 SCTQPPMETKWN*KKK-NMYTFLINEEKMFLTSVMNL 391
SC+ P +TK + KK+ N T +EE F+T +MN+
Sbjct: 338 SCSSSPAKTKTSTKKENNNSTNNDSEETEFITKLMNM 374
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 608 MPTFVFVKNGKKLDEFSGANVDKLXTTILK 519
+P FVF K+GK +D GA+ L + K
Sbjct: 75 VPYFVFFKDGKTVDTLEGADPSSLANKVGK 104
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGA 552
++PTF+ K+GK D F GA
Sbjct: 130 ALPTFILFKDGKLWDRFEGA 149
>At1g07700.3 68414.m00829 thioredoxin family protein low similarity
to thioredoxin [Gallus gallus] GI:212766; contains Pfam
profile: PF00085 Thioredoxin
Length = 217
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
++P F F KNG L+ F+ + +++ ILK+
Sbjct: 181 AVPLFHFYKNGVLLESFATRDKERIDAAILKY 212
>At1g07700.1 68414.m00828 thioredoxin family protein low similarity
to thioredoxin [Gallus gallus] GI:212766; contains Pfam
profile: PF00085 Thioredoxin
Length = 204
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 611 SMPTFVFVKNGKKLDEFSGANVDKLXTTILKH 516
++P F F KNG L+ F+ + +++ ILK+
Sbjct: 168 AVPLFHFYKNGVLLESFATRDKERIDAAILKY 199
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 466 ELKKKKHVYVFNK*RKNVFNVCNEFEDINF*CLQPLECK 350
E K K HV + + KN++ N +N C + CK
Sbjct: 325 EKKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCK 363
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 466 ELKKKKHVYVFNK*RKNVFNVCNEFEDINF*CLQPLECK 350
E K K HV + + KN++ N +N C + CK
Sbjct: 325 EKKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCK 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,365,777
Number of Sequences: 28952
Number of extensions: 208974
Number of successful extensions: 380
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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