Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A11
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    57   2e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    47   2e-06
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    43   2e-05
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.00 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   4.0  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/75 (38%), Positives = 44/75 (58%)
 Frame = -1

Query: 491 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPE 312
           A+K KD    E+  E  K++DK+ NG +   ELTH L +LGE+L   EVA++ ++     
Sbjct: 75  ARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA--DT 132

Query: 311 DDDGMIPYAAFLKKV 267
           D DG+I Y  F + +
Sbjct: 133 DGDGVINYEEFSRVI 147



 Score = 29.1 bits (62), Expect = 0.43
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -1

Query: 458 DFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAF 279
           +F E   L+D++++G +   EL   + +LG+    +E+ ++  +     D +G I +  F
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEV--DADGNGTIDFTEF 70

Query: 278 L 276
           L
Sbjct: 71  L 71


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 26/87 (29%), Positives = 49/87 (56%)
 Frame = -1

Query: 521 LEEFLPXYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVA 342
           +E+FL   ++       G  E+F++  +++DK+  G++   EL + L +LGEKL + E+ 
Sbjct: 57  MEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMD 116

Query: 341 EVTKDCMDPEDDDGMIPYAAFLKKVMA 261
           E+ K        DGM+ Y  F++ ++A
Sbjct: 117 ELLKGV---PVKDGMVNYHDFVQMILA 140


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 46/77 (59%)
 Frame = -1

Query: 491 AKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPE 312
           + K ++  + E++++  +++DK+ +G +  A+    +  LGEKL D+EV  + ++  DP 
Sbjct: 68  SNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DP- 125

Query: 311 DDDGMIPYAAFLKKVMA 261
            + G   Y  F++++MA
Sbjct: 126 TNSGSFDYYDFVQRIMA 142



 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/60 (23%), Positives = 34/60 (56%)
 Frame = -1

Query: 461 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAA 282
           ++  E   LYD +++GL+  + +   L +LG  + D+E+A+++ +  D  D+   + + +
Sbjct: 9   DEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS 68


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -1

Query: 509 LPXYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTK 330
           L  Y+  + +  +   +D  E  KL+D +++  +   EL   + ALG   + SEV ++ +
Sbjct: 21  LGGYAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILR 80

Query: 329 D 327
           D
Sbjct: 81  D 81



 Score = 29.5 bits (63), Expect = 0.33
 Identities = 21/88 (23%), Positives = 40/88 (45%)
 Frame = -1

Query: 527 LTLEEFLPXYSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSE 348
           L +E+F+   ++   ++D    E+     +L+D +E G +    L      L E +DD E
Sbjct: 90  LQMEDFVRVMTEKIVERDP--LEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQE 147

Query: 347 VAEVTKDCMDPEDDDGMIPYAAFLKKVM 264
           +  + ++     D DG I    F+  +M
Sbjct: 148 LEAMIEEF--DLDQDGEINEQEFIAIMM 173


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 112  APPEELSPPRALPAPVPQSRASVF*GPSHRT 204
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 374 LGEKLDDSEVAEVTKDCMDPED 309
           L EK+ D +   +  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,541
Number of Sequences: 5004
Number of extensions: 31458
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)