BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_pT_A09 (779 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 29 3.2 SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8 >SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) Length = 1383 Score = 29.5 bits (63), Expect = 3.2 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +3 Query: 291 LPF-PIKQVYKYNMN-PCFRSFSLIHTSDCLTSRNC 392 +PF PIK + N + PC F++ H+ CLT NC Sbjct: 384 IPFIPIKSLAIVNTDGPCAFVFTMTHSLTCLTLTNC 419 >SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3592 Score = 27.9 bits (59), Expect = 9.8 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Frame = +3 Query: 267 CKLFTCVFLPFPIKQVYKYNMNPCFRSFSLIHTSDCLT-SRNCRMDWQXXXXXXXXXXXX 443 C +F VFL I V + ++ S S+ S+CL R+C+ Sbjct: 886 CTVFPTVFLVIVIGSVLCFQLSSSSSSLSVYCVSNCLPHHRHCQCTVFPTVFIVIVSVLC 945 Query: 444 FQIILQAEIESLLCLSFSNTFFLMHCVSLLGLICVPILSMP 566 FQ+ + S+ C+S HC + + VP L+ P Sbjct: 946 FQLSSSSSSLSVYCVSNCLPRH-RHCQDAVPSLQVPELTEP 985 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,093,639 Number of Sequences: 59808 Number of extensions: 385268 Number of successful extensions: 635 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 635 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2131907602 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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