Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A09
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.79 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 674 SLQ*LCRCLYFNYLISLLCDCRDCECNLY*EK*VNIWH*ENWNTN 540
           S Q LCR     + +   CD   C+C +        ++   WNTN
Sbjct: 732 SEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWNTN 776



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 162 AKSWQYIVACHFVNIH 209
           A+SWQ + + H +++H
Sbjct: 85  AQSWQRLTSLHELHVH 100


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 532 LD*FVFQFSQCHIFTYFSQYKLHSQSL 612
           +D F  Q  +    TYF QY LH + L
Sbjct: 2   MDNFTLQSLKKDFGTYFQQYCLHHKIL 28


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -2

Query: 571 IYGIERIGTQINPSKETQCIRKNVFEKLKHKRLS 470
           + GI R+G+   PS+   C  + + +++  + L+
Sbjct: 392 VSGINRVGSTRRPSRRNSCESQMMGDEMSLRELT 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,152
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)