Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A09
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38750.1 68417.m05488 expressed protein                             29   2.6  
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At1g32090.1 68414.m03949 early-responsive to dehydration protein...    29   4.6  

>At4g38750.1 68417.m05488 expressed protein 
          Length = 1073

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 157 WKQNHGNILWHVILSIFTFLQS 222
           WK NHGN+ W V L +   +++
Sbjct: 31  WKYNHGNMRWKVTLKVIELMKT 52


>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 657

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 80  KSPGLKTPKCTSGIK**FNLNINSKHGSKIMAIYCGMSFCQYSLFFKA*NIFITETKMTQ 259
           +SP LK P C+  +    N +I+S  G+KI       S C+     +A  +   E+  +Q
Sbjct: 22  RSP-LKPPSCSVALN---NPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESSPSQ 77

Query: 260 QYVQIVYLC 286
           Q  +++ LC
Sbjct: 78  QTYELLILC 86


>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 293 QENTSKQFAHIAVSF*FQ**RCFML*RKVN 204
           Q  +SK F HIAV + F    CFML R+ N
Sbjct: 152 QPKSSKFFFHIAVEYIFTFWACFMLYREYN 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,646
Number of Sequences: 28952
Number of extensions: 270101
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)