Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A08
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 310 1e-85
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 151 1e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 140 1e-34
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 9e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 81 2e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 8e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.8
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 8.5
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.5
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 310 bits (761), Expect = 1e-85
Identities = 144/165 (87%), Positives = 154/165 (93%)
Frame = -3
Query: 733 DIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 554
DIKEKL YVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLE 270
Query: 553 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKII 374
+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+
Sbjct: 271 NAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIV 330
Query: 373 APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 239
APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 331 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 151 bits (365), Expect = 1e-37
Identities = 70/165 (42%), Positives = 106/165 (64%)
Frame = -3
Query: 733 DIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 554
+IKEK YVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSE 275
Query: 553 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKII 374
+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI
Sbjct: 276 ASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIY 335
Query: 373 APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 239
A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 336 ASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 140 bits (340), Expect = 1e-34
Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 12/168 (7%)
Frame = -3
Query: 733 DIKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 554
++KEKL YV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSE 270
Query: 553 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------AP 398
G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L P
Sbjct: 271 QPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDP 330
Query: 397 STI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 266
+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 331 ARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (292), Expect = 9e-29
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Frame = -3
Query: 676 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 524
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 523 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 350
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 349 VWIGGSILASLSTFQQMWISKEEYDESG 266
VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -3
Query: 547 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 368
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 367 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 242
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 80.6 bits (190), Expect = 2e-16
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Frame = -3
Query: 733 DIKEKLXYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 614
+IKE + YV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 613 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 434
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 433 DRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 254
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G I+
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIM 395
Query: 253 HRK 245
RK
Sbjct: 396 TRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 75.4 bits (177), Expect = 8e-15
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Frame = -3
Query: 730 IKEKLXYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 563
IKE+ YV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 562 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI- 389
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 388 -------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 248
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = -3
Query: 607 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 428
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 427 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 263
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 493 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 323
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 322 SLSTFQQMWISKEEYDESGPGIVHRK 245
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 346 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 245
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 421 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 311
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 183 ELGRAQHHTAPGSRGRAA*KHLRWT 257
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 542 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 414
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 730 IKEKLXYVALDFEQEMATAAASTSLEKSYELPDGQV 623
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,708
Number of Sequences: 5004
Number of extensions: 48560
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -