Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_A04
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 271 4e-73
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 269 2e-72
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 208 5e-54
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 196 2e-50
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 192 2e-49
06_03_0067 - 16167420-16167845,16168291-16168406,16168634-161688... 28 10.0
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 271 bits (665), Expect = 4e-73
Identities = 129/178 (72%), Positives = 148/178 (83%), Gaps = 1/178 (0%)
Frame = -1
Query: 804 YAGKIDIGMDVAAXEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIE 628
Y+GKI IGMDVAA EF KDG YDL+FKN ++ LS+++L D+Y +F+KDFP+VSIE
Sbjct: 283 YSGKIKIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIE 342
Query: 627 DPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTES 448
DPFDQDDWS+WA+L IQIVGDDL VTNPKRIA A+ KKACN LLLKVNQIG+VTES
Sbjct: 343 DPFDQDDWSSWASLQSSVNIQIVGDDLLVTNPKRIAEAIGKKACNALLLKVNQIGTVTES 402
Query: 447 IDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQIL 274
I A L +K GWG MVSHRSGETED FIADL VGL++GQIKTGAPCRSERLAKYNQI+
Sbjct: 403 IQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRSERLAKYNQIV 460
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 269 bits (660), Expect = 2e-72
Identities = 133/197 (67%), Positives = 156/197 (79%), Gaps = 5/197 (2%)
Frame = -1
Query: 804 YAGKIDIGMDVAAXEFF--KDGKYDLDFKNPDSNPGDY-LSSEKLADVYLDFIKDFPMVS 634
Y GK+ IGMDVAA EF+ KD YDL+FK D+N G + +S + L DVY F+ ++P+VS
Sbjct: 271 YTGKVVIGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYPIVS 329
Query: 633 IEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGS 460
IEDPFDQDDW+ +A LT +QIVGDDL VTNP R+A A+ +K CN LLLKVNQIGS
Sbjct: 330 IEDPFDQDDWATYAKLTDEIGQQVQIVGDDLLVTNPTRVAKAISEKTCNALLLKVNQIGS 389
Query: 459 VTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQ 280
VTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLSTGQIKTGAPCRSERLAKYNQ
Sbjct: 390 VTESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQ 449
Query: 279 ILRIEEELGVNAKYAGK 229
+LRIEEELG A YAG+
Sbjct: 450 LLRIEEELGDAAVYAGE 466
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 208 bits (507), Expect = 5e-54
Identities = 108/195 (55%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Frame = -1
Query: 804 YAGKIDIGMDVAAXEFF--KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSI 631
Y GK+ IGMDVAA EF+ KD YDL+FK +++ +S + L +VY F+ ++P+VSI
Sbjct: 243 YTGKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSI 302
Query: 630 EDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSV 457
EDPFDQDDW +A +T +QIVGDDL VTNP R+A A+++K+CN LLLKVNQIGSV
Sbjct: 303 EDPFDQDDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNALLLKVNQIGSV 362
Query: 456 TESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQI 277
TESI+A ++K+ GWG M SHRSGETEDTFIADL VGL+T +
Sbjct: 363 TESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLAT-------------------L 403
Query: 276 LRIEEELGVNAKYAG 232
LRIEEELG A YAG
Sbjct: 404 LRIEEELGAAAVYAG 418
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 196 bits (478), Expect = 2e-50
Identities = 89/173 (51%), Positives = 122/173 (70%)
Frame = -1
Query: 744 KYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 565
KYD++FK + + + +++ L ++Y ++P+VSIE PFD+DDW T Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364
Query: 564 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSG 385
+VGDDL +++P+RI AV + CN L+LK NQ+G+VTE+I+ AK WG MVSHRSG
Sbjct: 365 VVGDDLLMSDPERIKRAVNEYTCNALVLKANQVGTVTEAIEVVRQAKDAHWGVMVSHRSG 424
Query: 384 ETEDTFIADLVVGLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKN 226
+T+D+FIADL VG + GQIK GAPCR E L+KYNQ+LRIEEELG + YAG+N
Sbjct: 425 DTDDSFIADLAVGAAAGQIKAGAPCRGECLSKYNQLLRIEEELGSDGVYAGEN 477
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 192 bits (469), Expect = 2e-49
Identities = 109/208 (52%), Positives = 135/208 (64%), Gaps = 17/208 (8%)
Frame = -1
Query: 804 YAGKIDIGMDVAAXEFF-KDGKYDLDFKNPDSNPGDYLSSEKLADVYLDFIKDFPMVSIE 628
Y GK+ IGMDVAA EF+ +D YDL+FK +++ +S + L +VY F+ ++P+VSIE
Sbjct: 208 YTGKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIE 267
Query: 627 DPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNP--------------KRIATAVEKKAC 496
DPFDQDDW +A +T +QIVGDDL VTNP +R+A A++ KAC
Sbjct: 268 DPFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTFPCWLQYSNQFDLQRVAKAIKDKAC 327
Query: 495 NCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGA 316
N LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLST
Sbjct: 328 NALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLST------- 380
Query: 315 PCRSERLAKYNQILRIEEELGVNAKYAG 232
+LRIEEELG A YAG
Sbjct: 381 ------------LLRIEEELGAAAVYAG 396
>06_03_0067 -
16167420-16167845,16168291-16168406,16168634-16168871,
16168903-16169033,16169100-16169289
Length = 366
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 564 IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ--IGSVTESIDAHLLAKKNGWGTMVSHR 391
+VGDDL PKR A ++ C ++ +Q IG + HL+A ++ V
Sbjct: 215 VVGDDLDNAVPKRDARFTNRRWC----VRDSQIVIGGAGMFVFQHLIATQSPATAAVMAG 270
Query: 390 SGETEDTFIADLVVGL 343
T+D A +VG+
Sbjct: 271 ESSTDDAAAAYTLVGI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,785,180
Number of Sequences: 37544
Number of extensions: 471328
Number of successful extensions: 1130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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