Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A04
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                  147   1e-35
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             31   1.4  
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                 30   2.5  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score =  147 bits (356), Expect = 1e-35
 Identities = 75/104 (72%), Positives = 79/104 (75%)
 Frame = -1

Query: 642 MVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIG 463
           +VSIED FDQD W AW+ LTG   IQIVG          I TA+EKKACNCLLLKVNQIG
Sbjct: 129 VVSIEDAFDQDHWDAWSKLTGNVDIQIVG----------IQTAIEKKACNCLLLKVNQIG 178

Query: 462 SVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQ 331
           SVTESI A  LA+ NGWG MVSHRSGETEDTFIADLVVGL  GQ
Sbjct: 179 SVTESIKACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCAGQ 222



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 804 YAGKIDIGMDVAAXEFFKDGKYDLD 730
           Y GKI IGMDVAA     +  +D D
Sbjct: 115 YTGKISIGMDVAASVVSIEDAFDQD 139


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
 Frame = -1

Query: 639 VSIEDPFDQDDWSAWANLTGRTPIQ--IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI 466
           ++  D +DQD   AW  L  R   +  ++G++L   NP  +AT V +K  +  LL  +  
Sbjct: 233 IAANDFYDQDR-EAWTKLNQRIGEKCFVIGNELYRRNPSILATGVTEKLSSVALLSADNA 291

Query: 465 GSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVV----------GLSTGQ--IKT 322
            +VTE  +        G   M+S    E  +T   D V            ++TG   I+ 
Sbjct: 292 NTVTELWEKIRAVADQGGLVMLSKGQVEDVNTLAVDFVSTVVNTIPVANAVATGARFIRL 351

Query: 321 GAPCRSERLAKYNQILRIEEELGVNAK 241
           G P R E + K+ +++ IE+ L  N K
Sbjct: 352 GGPARMEHVTKHRRMIEIEQILEQNGK 378


>SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
 Frame = +1

Query: 223 EVLPGVFGVDTKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGLTR 390
           E+LPG+ G    F+F A    V  LGE   L     A   + R Q++++  NKG     R
Sbjct: 235 ELLPGLVGSIANFVFKAAEEAVKFLGENAWLLILAVAAFLVRRMQSSHR--NKGALPPGR 292

Query: 391 SVRDHCA-PSVLLGQQVSIN*LCYAADLIDLQ*QAVA--CLLLNCSSDTLRVCHRQIITN 561
              D    P +  G  +S + LC   D +  +   V     L+  + D LRV H+  I  
Sbjct: 293 HAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAELHRVRGFLQLIVVADDALRVYHQ--IAR 350

Query: 562 NLNRRASGEVCPC 600
           +      G VC C
Sbjct: 351 HHPHSCIGVVCVC 363


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 792 IDIGMDVAAXEFFKDGKYDLD 730
           + + +DVAA EFF+DGKY  +
Sbjct: 91  VALALDVAASEFFEDGKYTFE 111


>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 142 FCWNQNADNLKTQNFTFFLREFLDRSTEVLP 234
           FCW     NL  +  T+ LR+FL   TE++P
Sbjct: 60  FCWKHYYWNLTNEGITY-LRDFLHLPTEIVP 89


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 705  GDYLSSEKLAD-VYLDFIKDFPMVSIEDPFDQD 610
            GD  + E +A+  ++DF++D P V+ E+P D D
Sbjct: 3331 GDDAAGELMAEPFFVDFLRDAPEVTGEEPEDAD 3363


>SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
 Frame = +1

Query: 223 EVLPGVFGVDTKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGL-- 384
           E+LPG+ G    F+F A    V  LGE   L     A   + R Q++++  N GI  L  
Sbjct: 274 ELLPGLVGSIANFVFKAAGEAVKFLGENAWLLILAVAAFLVRRMQSSHR-NNCGILALPP 332

Query: 385 -TRSVRDHCAPSVLLGQQVSIN*LCYAADLIDLQ*QAVA--CLLLNCSSDTLRVCHR 546
              +V     P +  G  +S + LC   D +  +   V     L+  + D LRV H+
Sbjct: 333 GRHAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAERHGVRGFLQLIVVAHDALRVYHQ 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,280,013
Number of Sequences: 59808
Number of extensions: 544993
Number of successful extensions: 1517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)