Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A01
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           56   2e-08
SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)                    30   0.79 
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       27   5.6  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = -2

Query: 195 KVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQVQQK 73
           KVHGSLARAGKVK QTPKV+       KTGRAKRR+Q  ++
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKKKKKTGRAKRRMQYNRR 42



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = -3

Query: 86  KYNRRFVNVVQTFGRRRGPNSNS 18
           +YNRRFVNVVQTFGRRRGPNSN+
Sbjct: 38  QYNRRFVNVVQTFGRRRGPNSNA 60


>SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)
          Length = 369

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 198 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQVQQKICQR 61
           GKV+G +   GKV G+ P            G+   R+  Q+K+ +R
Sbjct: 102 GKVYGRVPARGKVYGRVPTYGKVYERVPARGKVYGRVPTQEKVYER 147



 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 198 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQVQQKICQR 61
           GKV+  +   GKV G+ P  E         G+   R+ V+ K+  R
Sbjct: 122 GKVYERVPARGKVYGRVPTQEKVYERVPARGKVNWRVPVRGKVYWR 167


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 151 NPQSGKTTKKEEEDWP 104
           NP  GKT  +E++DWP
Sbjct: 384 NPPQGKTPIEEDDDWP 399


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 266 KGAPHNDRVRSSSPTAARVRMRS 334
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 429 WLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERIR 322
           W I  Y  + H+RG+  H  +V GQ+   + KE +R
Sbjct: 9   WGINTYRHKEHVRGRDRHKENVRGQD---RHKEHVR 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,260
Number of Sequences: 59808
Number of extensions: 216422
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)