Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A01
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    57   7e-09
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    28   3.7  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    28   3.7  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    28   3.7  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    28   3.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = -2

Query: 207 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQVQQK 73
           LLGGKVHGSLARAGKV+ QTPKV+       K GRA RR+Q  ++
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRR 112



 Score = 35.1 bits (77), Expect = 0.024
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 86  KYNRRFVNVVQTFGRRRGPNSNS 18
           +Y RR+VNV    G++RGPNSNS
Sbjct: 108 QYTRRYVNVASGPGKKRGPNSNS 130


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 298 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKSN 450
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+   +N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 298 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKSN 450
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+   +N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 298 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKSN 450
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+   +N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 298 FIANCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKSN 450
           F AN    +  FLD  N    I+ +DV  L +  Q  + K   PS+   +N
Sbjct: 165 FTANALNCSCPFLDAANEDSEIENEDVDMLANTPQFPLFKGIDPSVLGSAN 215


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 416  FTICSCISEGNRHTSWTSMARS 351
            F I  C   G  HT WT   RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 297 LHRQLQQEYECVP*SDQWTPGH*R-PGRVSIAL*YATAYCKI 419
           LH   ++E EC P   +    H + PGR S A  YA   C+I
Sbjct: 375 LHDGKRRESECAPCGSKALCAHHKLPGRTSAAEQYAEKNCEI 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,543
Number of Sequences: 27780
Number of extensions: 155804
Number of successful extensions: 340
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)