Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_A01
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            51   3e-07
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    51   3e-07
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            51   3e-07
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   4.5  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -2

Query: 198 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQ 85
           GKVHGSLARAGKV+GQTPKV          GRA +R+Q
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQ 39



 Score = 33.9 bits (74), Expect = 0.052
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 86  KYNRRFVNVVQTFGRRRGPNSN 21
           ++NRRFV  V  FG++RGPNS+
Sbjct: 39  QHNRRFVTAVVGFGKKRGPNSS 60


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -2

Query: 198 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQ 85
           GKVHGSLARAGKV+GQTPKV          GRA +R+Q
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQ 39



 Score = 33.9 bits (74), Expect = 0.052
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 86  KYNRRFVNVVQTFGRRRGPNSN 21
           ++NRRFV  V  FG++RGPNS+
Sbjct: 39  QHNRRFVTAVVGFGKKRGPNSS 60


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = -2

Query: 198 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQ 85
           GKVHGSLARAGKV+GQTPKV          GRA +R+Q
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQ 39



 Score = 33.9 bits (74), Expect = 0.052
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 86  KYNRRFVNVVQTFGRRRGPNSN 21
           ++NRRFV  V  FG++RGPNS+
Sbjct: 39  QHNRRFVTAVVGFGKKRGPNSS 60


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 399  HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 301
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,775,361
Number of Sequences: 28952
Number of extensions: 146431
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)