Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P23
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    29   0.32 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   2.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.0  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.2  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 266 YLANISD*LSPYSAGRYIYCRYIHPFPKVVK 174
           +L  + D L P++AG ++Y  Y+  FP++++
Sbjct: 392 FLLQLEDKLLPFTAGGFLYIAYLGVFPELLE 422


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 473 WQYRPILQ*CSQFVQNLRSSYDIFGPVINGTLSKRSEKANTDQK 342
           W Y  + +    F+QN+ S  +I    I  +LS +++ A T +K
Sbjct: 492 WLYNHLQENIEDFLQNIGSLLNISAATIGVSLSSQNKSAPTAKK 535


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 440 ESIIEELVDIANNFEVDSDNIQEL 511
           E ++EEL ++ NN EV+S  +  L
Sbjct: 448 EYLMEELNELKNNLEVESSKVLRL 471


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 93  LDDDELINIEQW-----INSRAYKKGIKSYKSFYNFRKWMNIST 209
           +D  +LI + +W     ++   +KK    YK+FY  R W ++ T
Sbjct: 443 VDGTQLITLPKWERFHKLSEVDWKKAF--YKTFYESRSWFHLVT 484


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 60  LNTTCWKCSLELDDDE 107
           LNT   KC+L LD DE
Sbjct: 371 LNTVIQKCNLSLDQDE 386


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -1

Query: 440 QFVQNLRSSYDIFGPVINGTLSK---------RSEKANTDQKQIPRTISEL 315
           +F++NL+S +D  GP+     S+         ++++ N D K I +   E+
Sbjct: 441 EFIENLKSEFDYKGPIARKRTSESRHLHYLMAKAKRENADSKTIRKIAIEM 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,040
Number of Sequences: 5004
Number of extensions: 40860
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)