Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P22
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14850.1 68415.m01687 expressed protein                             31   1.0  
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At3g58050.1 68416.m06471 expressed protein                             28   5.5  
At4g33890.2 68417.m04809 expressed protein                             28   7.2  
At4g33890.1 68417.m04808 expressed protein                             28   7.2  
At3g14000.2 68416.m01768 expressed protein                             28   7.2  
At3g14000.1 68416.m01767 expressed protein                             28   7.2  
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS...    27   9.5  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    27   9.5  

>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 169 RSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHV 318
           RS K   R + LGP  KP  L     E+MS  +A +LP+ V+ V +   V
Sbjct: 104 RSRKFRDRPSPLGPLGKPQSLTTTNDESMS--KAQRLPMEVVSVEDGEEV 151


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -2

Query: 320 RTCLDSPTFNTATGSFTASCSDMASTCIT----FNSSGLASGPNNA*RMTSLLLRGYSAF 153
           + CL  P+ N+A  S   S + +++   +     N  GL +  + +  M  +++R  S  
Sbjct: 110 KRCLSLPSSNSAKLSLVVSTTPVSAVVHSEQPKSNKDGLHASVSRSLSMNRVIVRAVSFD 169

Query: 152 ASGSHVSD*CDDERVTP 102
            + +H+S+  + +++TP
Sbjct: 170 DNKNHISNEANGDQITP 186


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 109 TLSSSHQSETWDPEAKAEYPRSN 177
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +1

Query: 169 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 318
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +1

Query: 169 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 318
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 686 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 558
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 686 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 558
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
           (HSP17.6A-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]
          Length = 155

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 133 ETWDPEAKAEYPRSNKLVIRQALLGPDAKPD-ELNVIQVEAMSL-QEAVKLPV---AVLK 297
           + WDP  + ++P S+   I  A +  D K   E +V + +   + +E VK+ +   +VLK
Sbjct: 25  DVWDPFKELQFPSSSSSAIANARV--DWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLK 82

Query: 298 VGESRHV 318
           +   RHV
Sbjct: 83  ISGERHV 89


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -3

Query: 649 PKMATVRLAQNGSPGGLFISWHSS-----WAMQLCLWHYSTFSLFCPWVH 515
           P++ + R  + G  GG    W  S     W + + LW Y  F +   W H
Sbjct: 28  PRVYSGRTPRRGHGGGGAFQWFRSSRLVYWLLLITLWTYLGFYVQSRWAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,193
Number of Sequences: 28952
Number of extensions: 274924
Number of successful extensions: 704
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)