Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P21
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    29   3.9  
At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to...    28   6.8  
At1g33265.1 68414.m04113 expressed protein contains Pfam profile...    27   9.0  

>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 329 WDTDTTIAESSCQQV*CFVSQSECSLNYCSRTLVPAECL*RVVRLNLY 472
           W+ D  ++ +S  +  C+V  S+C L    + +  A+ +  +  LN Y
Sbjct: 601 WEEDLVVSNTSMCRPFCYVCNSQCKLPSIVKVVSKADVVLYICSLNCY 648


>At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]; contains Pfam profile PF00892:
           Integral membrane protein
          Length = 359

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 154 PLVG*WAMLKQVILLCSIPSLGAGIIFGSILGVGAY 261
           PL   + +L   ILLC I SLG+ I+ G +L +G Y
Sbjct: 289 PLSLLFTLLSSAILLCEIISLGS-IVGGLLLIIGLY 323


>At1g33265.1 68414.m04113 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136);
           supporting cDNA gi|23198247|gb|BT000332.1|
          Length = 177

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +1

Query: 223 GIIFGSILGVGAYQLSQDPSNYXXXXXXXXXXXXXXX----YRYYNSRKFMPAGLMFCLS 390
           G + GS+L   AY L++ P                      +R  +SRK +PAG +  LS
Sbjct: 90  GGLTGSVLMASAYFLTKSPETRVLGDTIGLGAAFLFSSVFGFRLASSRKPVPAGPLLLLS 149

Query: 391 VGMFT 405
           +GM +
Sbjct: 150 IGMLS 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,300
Number of Sequences: 28952
Number of extensions: 249657
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)