Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P17
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.7  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 459 GGTWRPSVTPTGSLPRPGSRPLGGTPTPVTNTSLKANPQP 578
           GG W  + T +  LP P + P+  T   V   +L   P P
Sbjct: 44  GGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 474 PSVTPTGSLPRPGSRPLGGTPTPVTNTSLKANPQPSRNFGSGHNNVAKP 620
           P+ TP  + P P   P      P  +T+    P PSRN  +  + V  P
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIP 273


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 432  NLELTVQRGGGTWRPSVTPTGSLP 503
            NL +  +  G  WR S++P  SLP
Sbjct: 1991 NLRIIERSSGNDWRSSLSPGDSLP 2014


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 474 PSVTPTGSLPRPGSRPLGGTPTPVTNTSLKANPQPSRNFG 593
           PS TPT +LP     P+G    P   T+ KA P P +  G
Sbjct: 443 PSATPTSALP-----PIGKFAPP---TTAKAQPAPEKRRG 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,325
Number of Sequences: 5004
Number of extensions: 59009
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)