Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P16
(828 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 138 5e-33
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 136 1e-32
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP... 67 2e-11
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 33 0.18
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ... 33 0.31
At5g22290.1 68418.m02599 no apical meristem (NAM) family protein... 28 8.7
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi... 28 8.7
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 28 8.7
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 28 8.7
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 138 bits (333), Expect = 5e-33
Identities = 59/126 (46%), Positives = 88/126 (69%)
Frame = +2
Query: 437 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 616
WL++ML YN+ GGK RG++ V SYK +++ + +TE ++C LGWC+E QAY +VLD
Sbjct: 34 WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93
Query: 617 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNE 796
DIMD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 94 DIMDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNE 152
Query: 797 TLWRTS 814
++T+
Sbjct: 153 VEFQTA 158
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 136 bits (330), Expect = 1e-32
Identities = 69/178 (38%), Positives = 106/178 (59%)
Frame = +2
Query: 281 LIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHY 460
L R + S++M T K+ + + DLL + N+S+L W+ +ML Y
Sbjct: 32 LYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRL--------WVDRMLDY 83
Query: 461 NLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSV 640
N+ GGK RG++ V S+K +++ +TE + ++C LGWC+E QAY +VLDDIMD S
Sbjct: 84 NVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVT 143
Query: 641 RRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTS 814
RRG PCW+R P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE +T+
Sbjct: 144 RRGQPCWFRVPQVGMV-AINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTA 200
>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 247
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +2
Query: 623 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 802
MD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 1 MDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVE 59
Query: 803 WRTS 814
++T+
Sbjct: 60 FQTA 63
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 470 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 637
GGK R G+ ++S+ T E E TEH +L +EM ++ DD++D S
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178
Query: 638 VRRG 649
+RRG
Sbjct: 179 MRRG 182
>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
GPPS, putative / dimethylallyltransferase, putative /
prenyl transferase, putative similar to GI:11322965;
Except for first 55 amino acids, 52% identical to Prenyl
transferase (Cyanophora paradoxa) (gi 99282). Location
of est 120E9T7 (gb|T43950)
Length = 417
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 470 GGKHTR-GITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRR 646
GGK R G+ ++S T E + E T++ +LG +EM ++ DD++D S +RR
Sbjct: 135 GGKRMRPGLVFLVSRATAELAG-LKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRR 192
Query: 647 G 649
G
Sbjct: 193 G 193
>At5g22290.1 68418.m02599 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 340
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 305 ANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVP 424
A M +S+NL++ N++ F D+L + I+ L P
Sbjct: 219 AEMAESSENLQVDNDEDFFADILRDEIINLDEAVMTGNTP 258
>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 555
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 401 KSKLSEVP--QIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 574
K E+P Q+ W M+H + G + ++ EKP+++T + AC G
Sbjct: 329 KRIFDEMPEKQVASW-NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHG 387
Query: 575 WCVE 586
VE
Sbjct: 388 GLVE 391
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 362 DDLLPEVIMTLQNKSKLSEVP 424
DDLL I TLQN+ K E+P
Sbjct: 555 DDLLRSTITTLQNQPKSKEIP 575
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 362 DDLLPEVIMTLQNKSKLSEVP 424
DDLL I TLQN+ K E+P
Sbjct: 556 DDLLRSTITTLQNQPKSKEIP 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,491,934
Number of Sequences: 28952
Number of extensions: 406268
Number of successful extensions: 1037
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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