Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P15
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42) 90 1e-18
SB_47251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 30 1.1
SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 29 2.6
SB_49342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 4.5
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0) 28 5.9
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42)
Length = 149
Score = 89.8 bits (213), Expect = 1e-18
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +3
Query: 195 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTE 374
P+ E+ + + LV KLAACV+ IP + SI+ W +I ED E L+++KT +
Sbjct: 50 PSMEIAKNLSTALVTKKLAACVSIIPKVLSIFFWNGKIVEDTEALMVMKTTQLMAKNVIN 109
Query: 375 YVRSNHPYEVCEVISVPIKNGNPPYLKWIGDIV 473
+++++HPY+V EV+++ IK+GN Y+KWI D V
Sbjct: 110 FIKTSHPYDVPEVLTLAIKDGNSEYMKWIHDSV 142
>SB_47251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 300 FSTHK*MLFREWSLHRQQAYSSPDHDL 220
+S HK M + WSLH+ +A S DH L
Sbjct: 226 WSLHKMMGEKRWSLHKSRAVGSRDHSL 252
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 212 SNFIIGYCHIYHRIFVTINTSRRHICLTINKTRPH 108
++F++ YCH H T+ R H C +I K H
Sbjct: 120 ADFVVKYCHDCHDKIHTMEVFRGHRCTSIEKNAIH 154
>SB_16219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 233 QTMTYSSSN--FIIGYCHIYHRIFVTINTSRRHICLTI 126
QTM + N F+I H+Y RIF ++NT +C+ +
Sbjct: 113 QTMALVALNRYFLIVRPHLYRRIFTSVNTKVMIVCVWV 150
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 228 GLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTS---QVDKLTEYVRSNHPY 398
G V+ + C SI IYE +E E KET M ++T Q + L E+++SN
Sbjct: 254 GQVEKTIIYC-KSINACGDIYEVLSENVESKETYAMFHSKTPDSIQKEVLGEFIKSNSKI 312
Query: 399 EV 404
V
Sbjct: 313 RV 314
>SB_49342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 485 FSFWHNI-SNPFQVWWITVLYGYRYNLAY 402
F W + S P+ VW + + Y Y+ NL Y
Sbjct: 77 FKVWCDFYSEPYMVWTLVLSYAYKNNLKY 105
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 279 TSIYEWKNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGN 440
T++ W+ + T++M+ T TEY + HP V+ P+ N N
Sbjct: 1367 TTVEFWRMVMQYKAGTIVMLNTLEETGQTYTEYWPTEHPEIYGSVLVEPLSNDN 1420
>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1317
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 282 SIYEWKNEINEDKETLL-MIKTRTSQVDKLTEYVRSNH 392
+I EWK+ INE LL +I+TRT ++ E + H
Sbjct: 840 TIAEWKDGINESWADLLELIETRTKMLEAALELHKYYH 877
>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 182 YHRIFVTINTSRRHICLTINKTRPH 108
Y+RI T ++ + ICLT +T PH
Sbjct: 187 YYRIVTTESSGMKDICLTGKRTDPH 211
>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 179 HRIFVTINTSRRH-ICLTINKTRPH 108
H + +T+ +R H + LT+ +TRPH
Sbjct: 82 HAVSLTVKRTRPHAVSLTVKRTRPH 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,472
Number of Sequences: 59808
Number of extensions: 323542
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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