Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P15
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -2

Query: 264 SLHRQQAYSSPDHDL*FFQLHHWVLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDKKLK 85
           SL RQ    SPD  L   ++++W  +      C+++    T+    + N   L + K   
Sbjct: 511 SLIRQSIIESPDKQLTLNEIYNWFQN----TFCYFRRNAATWKNAVRHN---LSLHKCFM 563

Query: 84  QFSCLKKSACYLLNIDFYDQR 22
           +   +K +   +  ++FY +R
Sbjct: 564 RVENVKGAVWTVDEVEFYKRR 584


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 216 FFQLHHWVLSHIPPNICHYQH 154
           FF  H W +    P+ C  +H
Sbjct: 506 FFSFHQWGILVYEPSACRPRH 526


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 NEINEDKETLLMIKTR 347
           N  NED E L+M+K R
Sbjct: 645 NRHNEDMEKLMMLKHR 660


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 191 CHIYHRIFVTINTSRRH 141
           C + H++F T+N+   H
Sbjct: 404 CALCHKVFRTLNSLNNH 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,995
Number of Sequences: 438
Number of extensions: 3135
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)