Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P15
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33740.2 68415.m04137 copper-binding protein (CUTA) identical...   109   2e-24
At2g33740.1 68415.m04136 copper-binding protein (CUTA) identical...    88   4e-18
At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...    29   2.1  
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...    29   2.1  
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    27   8.5  

>At2g33740.2 68415.m04137 copper-binding protein (CUTA) identical to
           copper-binding protein CUTA GI:12963361 from
           [Arabidopsis thaliana]; contains Pfam profile: PF03091
           CutA1 divalent ion tolerance protein
          Length = 182

 Score =  109 bits (261), Expect = 2e-24
 Identities = 45/89 (50%), Positives = 66/89 (74%)
 Frame = +3

Query: 195 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTE 374
           PN E G+ + + +V+ KLAACVN +PGI S+YEW+ ++  D E LL+IKTR S ++ LTE
Sbjct: 88  PNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTE 147

Query: 375 YVRSNHPYEVCEVISVPIKNGNPPYLKWI 461
           +V +NH Y+V EVI++PI  G+  YL+W+
Sbjct: 148 HVNANHEYDVPEVIALPITGGSDKYLEWL 176


>At2g33740.1 68415.m04136 copper-binding protein (CUTA) identical to
           copper-binding protein CUTA GI:12963361 from
           [Arabidopsis thaliana]; contains Pfam profile: PF03091
           CutA1 divalent ion tolerance protein
          Length = 156

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 36/69 (52%), Positives = 51/69 (73%)
 Frame = +3

Query: 195 PNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTE 374
           PN E G+ + + +V+ KLAACVN +PGI S+YEW+ ++  D E LL+IKTR S ++ LTE
Sbjct: 88  PNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTE 147

Query: 375 YVRSNHPYE 401
           +V +NH YE
Sbjct: 148 HVNANHEYE 156


>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1004

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 150 QKTYLFDYKQNKASLLIDKKLKQFSCLKKSACYLLNI 40
           Q T  F Y  NK+ LLI K +KQ   ++ S C+   I
Sbjct: 343 QLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATI 379


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 150 QKTYLFDYKQNKASLLIDKKLKQFSCLKKSACYLLNI 40
           Q T  F Y  NK+ LLI K +KQ   ++ S C+   I
Sbjct: 343 QLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATI 379


>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 294 WKNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPY 398
           W NE NE  E  + +  ++  + + + Y+  NHPY
Sbjct: 275 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPY 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,083,964
Number of Sequences: 28952
Number of extensions: 224289
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)