Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P14
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 55   9e-08
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          42   9e-04
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      33   0.40 
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.40 
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)                     28   8.7  
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   8.7  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 5/165 (3%)
 Frame = +2

Query: 230 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 409
           L+P +T+P L     + + S  II YL    A    LY  D   R  VDQ  + DI T  
Sbjct: 43  LSPFNTLPLLETKEGTFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQ--WLDITTCD 97

Query: 410 QRFSDYFYPQVFAGAPADKAKN-EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS 586
              +         G   + AK    + + L  ++K L G+K++ G ++T+AD S+  S++
Sbjct: 98  FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157

Query: 587 SLEAS--DIDFKKYANVKRWYETV--KSTAPGYQEANEKGLEAFK 709
            +  S  D D K Y N+  WY  +       G +E  ++  + FK
Sbjct: 158 VILTSLGDEDRKPYQNIVSWYTALVESDNTVGSKEFPKESHKPFK 202


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +2

Query: 215 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 367
           PE+L +NP   VP +V +G +++ES   I ++   ++   ++ P+DP  RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 166 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDP 258
           +PEP+T  P PR    +TR +  +P T+ PDP
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 166 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 258
           +P P+T RP PR    Q R +  E  T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 466  SQEREGPGSPSAAGQVPRRSEVRGRTEPHRRRLESHRQ 579
            S+E + P  P++  Q  RR+  R RT  H+R  +SHR+
Sbjct: 1385 SRELQLPSLPTSGPQYERRTLPRRRTSHHQRHTQSHRK 1422


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 212 KPEYLKLNP--QHTVPTLVD-DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 367
           KPE+ + +P  +  VPTL   DG  I ES  I  +L + Y K   LYP DP A++
Sbjct: 65  KPEWFQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRK-IPLYPCDPYAKS 118


>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
          Length = 366

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 172 EPQTGRPTPRGTAQTRIFEVEPSTHGP 252
           EP+T R + R T Q  I E EP   GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234


>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 311 VNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSD 424
           V KY KG+     DP   A V+ + +FD+G +++ FSD
Sbjct: 309 VEKYLKGTKRV--DPSLNAAVNGQ-FFDLGLMHKYFSD 343


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 314 NKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 460
           N   + SSL  + P A  L  Q+LY  +  LYQ      YP  F G P+
Sbjct: 293 NGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,620,186
Number of Sequences: 59808
Number of extensions: 524301
Number of successful extensions: 1640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)