Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P12
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 33 0.18
SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3) 28 3.9
SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038) 28 3.9
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 28 3.9
SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26) 28 3.9
SB_35841| Best HMM Match : rve (HMM E-Value=0.14) 28 5.1
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07) 28 5.1
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 27 6.8
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11) 27 9.0
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 285 PTWREAPAPVPTEAALAQR-LERELRAAKGASELATAEVLVPAELLARASRQTLALXEGE 461
P R APA P E L Q L++ + +K A+ L P +L R S + L EG
Sbjct: 1094 PVPRPAPAHAPAEVPLTQLILQQMIEKSKEAATKIPEISLDPEDLKKRYSGIIMMLYEGT 1153
Query: 462 PCGSRG 479
C S G
Sbjct: 1154 QCSSCG 1159
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 32.7 bits (71), Expect = 0.18
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 285 PTWREAPAPVPTEAALAQR-LERELRAAKGASELATAEVLVPAELLARASRQTLALXEGE 461
P R APA P E L Q L++ + +K A+ L P +L R S + L EG
Sbjct: 227 PVPRPAPAHAPAEVPLTQLILQQMIEKSKEAATKIPEISLDPEDLKKRYSGIIMMLYEGT 286
Query: 462 PCGSRG 479
C S G
Sbjct: 287 QCSSCG 292
>SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N+E W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 80 NAEMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136
>SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3)
Length = 422
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N++ W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 80 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136
>SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N++ W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 80 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136
>SB_54616| Best HMM Match : zf-AD (HMM E-Value=0.038)
Length = 607
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 285 PTWREAPAPVPTEAALAQRLERELRAAKGASELATAEVLVPAELLARASRQTLALXEGE 461
P +AP P +A + + + A + A+ A +VLVP E+ A + AL E
Sbjct: 151 PAVEQAPVPAVEQATVPAVEQAPVPAVEQATVPAEGQVLVPVEVRAPVPTEEQALVPAE 209
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 285 PTWREAPAPVPTEAALAQRLERELRAAKGASELATAEVLVPAELLARASRQTLALXEGE 461
P +AP P +A + + + A + A+ A +VLVP E+ A + AL E
Sbjct: 151 PAVEQAPVPAVEQATVPAVEQAPVPAVEQATVPAEGQVLVPVEVRAPVPTEEQALVPAE 209
>SB_24392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 140 ISSGIHRNSLNFFVSKSVQYK*KFGKHGDPA 232
ISSG + NS S S YK +F GD A
Sbjct: 136 ISSGYYSNSYRLVCSTSTSYKCRFNSIGDSA 166
>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
Length = 840
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N++ W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 560 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 616
>SB_35841| Best HMM Match : rve (HMM E-Value=0.14)
Length = 467
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 395
N++ W GP W P P L Q +E E + + LA AE
Sbjct: 70 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 116
>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 128 YFSSISSGIHRNSLNFFVSKSVQYK*KFGKHGD 226
+FSS G++ + + + S SV + KF HGD
Sbjct: 378 FFSSTPIGVNGSGITRYSSLSVPFYCKFSSHGD 410
>SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07)
Length = 287
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N++ W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 160 NADMWWKGPEWLSEPRCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 216
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 321 EAALAQRLERELRAAKGASELATA 392
EA LA++ E+E RAAK A E A A
Sbjct: 313 EAELAKQREKEARAAKRAEERAAA 336
>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
Length = 1461
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 425
N++ W GP W P P L Q +E E + + LA AE ELL +
Sbjct: 968 NADMWWKGPEWLLEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 1024
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,794
Number of Sequences: 59808
Number of extensions: 197782
Number of successful extensions: 556
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -