Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P12
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.4  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 166 TVPMNTGTYTRKISQVSFV 110
           T+ ++TG Y+R   ++ FV
Sbjct: 199 TIHLSTGNYSRLACEIQFV 217


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 120 TCDIFLV*VPVFIGT 164
           TC I+L  VP++ GT
Sbjct: 715 TCIIWLAFVPIYFGT 729


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 120 TCDIFLV*VPVFIGT 164
           TC I+L  VP++ GT
Sbjct: 805 TCIIWLAFVPIYFGT 819


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 231 AGSPCFPNFYLYCTLLD 181
           AGS CF N +L  + LD
Sbjct: 671 AGSQCFINIWLLGSRLD 687


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 120 TCDIFLV*VPVFIGT 164
           TC I+L  VP++ GT
Sbjct: 857 TCVIWLAFVPLYFGT 871


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,434
Number of Sequences: 438
Number of extensions: 1960
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)