Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P12
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...    28   3.2  
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.3  
At4g32330.2 68417.m04600 expressed protein                             27   9.7  
At4g32330.1 68417.m04599 expressed protein                             27   9.7  
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote...    27   9.7  
At3g14350.2 68416.m01814 leucine-rich repeat transmembrane prote...    27   9.7  
At3g14350.1 68416.m01815 leucine-rich repeat transmembrane prote...    27   9.7  

>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 362 GQRSQRARHRGGLSAGGAAREGVAADPRAXG 454
           G RS+  RH GG       R+G  A PRA G
Sbjct: 107 GDRSRGPRHEGGDRPRFGDRDGYRAGPRAGG 137


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 114 LYC*FALNDRFSDRRLVIVKRSMGI*KCPKLTTASD 7
           L C   L D+F++R+LV+    +GI  C K T   D
Sbjct: 385 LLCYPLLTDQFTNRKLVVDDWCIGINLCEKKTITRD 420


>At4g32330.2 68417.m04600 expressed protein
          Length = 436

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/87 (21%), Positives = 33/87 (37%)
 Frame = +3

Query: 228 LPVTNQFNVGFNSEKAWSGPTWREAPAPVPTEAALAQRLERELRAAKGASELATAEVLVP 407
           +P T   +     +K  SG    E   P     +L +R  ++   AKG       +    
Sbjct: 281 IPPTRPKSPKLGRKKTASGADSEETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQPV 340

Query: 408 AELLARASRQTLALXEGEPCGSRGAXV 488
            + L R   Q   L +G+P  ++ A +
Sbjct: 341 RKSLPRLPSQKTVLPDGKPAPAKAAII 367


>At4g32330.1 68417.m04599 expressed protein
          Length = 437

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/87 (21%), Positives = 33/87 (37%)
 Frame = +3

Query: 228 LPVTNQFNVGFNSEKAWSGPTWREAPAPVPTEAALAQRLERELRAAKGASELATAEVLVP 407
           +P T   +     +K  SG    E   P     +L +R  ++   AKG       +    
Sbjct: 282 IPPTRPKSPKLGRKKTASGADSEETQTPRLGRLSLDERASKDNPTAKGIMPTVDLKKQPV 341

Query: 408 AELLARASRQTLALXEGEPCGSRGAXV 488
            + L R   Q   L +G+P  ++ A +
Sbjct: 342 RKSLPRLPSQKTVLPDGKPAPAKAAII 368


>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 689

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  SYSHRSLDDN*SPVRKPVVQCELAV 111
           S  H+S DD+ S +RKP+V  + AV
Sbjct: 374 SERHKSFDDDDSTMRKPIVAKKAAV 398


>At3g14350.2 68416.m01814 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 680

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  SYSHRSLDDN*SPVRKPVVQCELAV 111
           S  H+S DD+ S +RKP+V  + AV
Sbjct: 337 SERHKSFDDDDSTMRKPIVAKKAAV 361


>At3g14350.1 68416.m01815 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 1 GB:AAC27894 from [Zea
           mays]
          Length = 717

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 37  SYSHRSLDDN*SPVRKPVVQCELAV 111
           S  H+S DD+ S +RKP+V  + AV
Sbjct: 374 SERHKSFDDDDSTMRKPIVAKKAAV 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,356,936
Number of Sequences: 28952
Number of extensions: 140768
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)