Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P10
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    94   8e-20
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    29   2.7  
05_03_0660 + 16724361-16724684,16725085-16725300                       28   6.3  
02_03_0240 - 16739628-16740369,16740392-16740978                       28   6.3  
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    28   8.4  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
 Frame = +3

Query: 177 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 356
           PQI KIL+  S  G+++    LE+   T   AY    G PFSA+GE  FL IQ  +    
Sbjct: 76  PQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGELAFLLIQADLFNVC 135

Query: 357 VLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKN 536
           +             LS YC +   ++ G     +   + A    I   A+  QI  N+ N
Sbjct: 136 LC------------LSRYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMN 183

Query: 537 GSTGQLSFITCFLLFGGSVXRIFTSIQE----TGDSIIILTY 650
             TG+LSF+TCF+ F GS+ R+FTSIQE    +G  ++++TY
Sbjct: 184 KGTGELSFLTCFMNFAGSIVRVFTSIQEKTPLSGILLVLITY 225


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 356 STPLWWRSNEGRNISVCLLCNSLSFSKWLY 445
           S  LWW +      S CL  N  SF  WLY
Sbjct: 590 SRQLWWIALRAIGHSECLPLNEQSFHSWLY 619


>05_03_0660 + 16724361-16724684,16725085-16725300
          Length = 179

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 582 GGSVXRIFTSIQETGDSIIILTYCVSTIANGA 677
           GGS  R+  ++ E+ +S+  L++C+S + + A
Sbjct: 10  GGSPRRVVVAVDESEESMHALSWCLSNVVSAA 41


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 309 GEGTFLAIQTAMIAALVLHYGGAPMKGGI 395
           GE TF      + AAL  H+GG  M  G+
Sbjct: 264 GESTFQEASAVISAALARHFGGDDMPSGV 292


>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +3

Query: 411 CAIVSV--LVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLFG 584
           C +V V  ++S YTST    T+   T+   +I K+ +I ++  +   G   +    ++  
Sbjct: 376 CEVVGVEGIMSAYTSTLYSVTLAGPTLFGPIINKAAEIASH--SLQYGNNKYFVLLIITD 433

Query: 585 GSVXRIFTSIQETGDSII 638
           G    + T IQET DSI+
Sbjct: 434 G----VLTDIQETKDSIV 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,818
Number of Sequences: 37544
Number of extensions: 409563
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)