Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P10
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical pr... 136 1e-32
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 31 1.1
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 1.1
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 1.1
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 31 1.1
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 1.1
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 29 2.5
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 2.5
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 29 2.5
Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical
protein F38E1.9 protein.
Length = 238
Score = 136 bits (329), Expect = 1e-32
Identities = 69/206 (33%), Positives = 106/206 (51%)
Frame = +3
Query: 63 CYNXSFLKXNFLXVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKILQSKSAEGINIYGVYL 242
C+ + NF C K+ PQI KI ++SA+GI+ L
Sbjct: 13 CFEELLINFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKIQAARSAQGISAASQLL 72
Query: 243 ELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIV 422
L +YSY GF FS WG+ F+A+Q +I + + G M FL + A+
Sbjct: 73 ALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSGQTMLSVGFLGIVSAVA 132
Query: 423 SVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLFGGSVXRI 602
+VS L +Q +PI++++K +QI NY+ STGQLS I+ FL F G++ R+
Sbjct: 133 YGVVSKSIPMQTLTAVQTAGIPIVVVSKLLQISQNYRAQSTGQLSLISVFLQFAGTLARV 192
Query: 603 FTSIQETGDSIIILTYCVSTIANGAI 680
FTS+Q+TGD ++I++Y + + NG I
Sbjct: 193 FTSVQDTGDMLLIVSYSTAAVLNGLI 218
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 306 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 467
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 306 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 467
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 306 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 467
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 306 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 467
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 731 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 785
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 306 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 467
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 314 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 409
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 496 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 527
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 314 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 409
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 659 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 690
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 380 NEGRNISVCLLCNSLSFSKWLYLH*YIMDHAGCHCSYHSHSQVNPNRNEL 529
+E NI +C+L L F+ +LY+H I + H Y+ +S+ N L
Sbjct: 186 HEVNNIRICVLIVLLFFAIFLYIHNKIREKRMVHNVYNINSRYKSYENYL 235
>Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical
protein C50B8.3 protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 348 LSLPFGWLKMFLHPMH*MGNPLHSYK 271
LS+ F W F HP+H G P Y+
Sbjct: 239 LSMDFTWGDSFSHPLHTHGGPYWQYE 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,232
Number of Sequences: 27780
Number of extensions: 366213
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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