Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P10
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 QIHTQQRSRNRHHSRVHTGK 172
           Q H +++S+N HH    T K
Sbjct: 55  QDHNKEKSKNNHHCNQDTEK 74


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 HCSYHSHSQVNPNRNELQKWQHWSTVVYNLLPV 577
           + +Y++++  N N N  +K Q+++      +P+
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 HCSYHSHSQVNPNRNELQKWQHWSTVVYNLLPV 577
           + +Y++++  N N N  +K Q+++      +P+
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 HCSYHSHSQVNPNRNELQKWQHWSTVVYNLLPV 577
           + +Y++++  N N N  +K Q+++      +P+
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = +2

Query: 479 HCSYHSHSQVNPNRNELQKWQHWSTVVYNLLPV 577
           + +Y++++  N N N  +K Q+++      +P+
Sbjct: 91  YSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 62  VLQRILSKVQFSXCTMFQIHTQQRSRNRHHSRVHTGK 172
           V +RI +K +   C + +   +   +   H R+HTG+
Sbjct: 137 VHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGE 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,260
Number of Sequences: 438
Number of extensions: 5008
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)