Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P10
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07390.1 68417.m01134 PQ-loop repeat family protein / transme...   123   1e-28
At5g59470.1 68418.m07453 PQ-loop repeat family protein / transme...   109   1e-24
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    30   1.7  
At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase fa...    28   5.3  
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ...    28   7.0  
At5g06680.1 68418.m00754 tubulin family protein similar to SP|Q9...    27   9.2  
At1g62935.1 68414.m07106 hypothetical protein                          27   9.2  

>At4g07390.1 68417.m01134 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q60441
           Mannose-P-dolichol utilization defect 1 protein
           (Suppressor of Lec15 and Lec35 glycosylation mutation)
           {Cricetulus griseus}, Lec35 protein [Cricetulus griseus]
           GI:9858721; contains Pfam profile PF04193: PQ loop
           repeat
          Length = 235

 Score =  123 bits (296), Expect = 1e-28
 Identities = 63/170 (37%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
 Frame = +3

Query: 177 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 356
           PQI KI+Q KS  G+++    LE+   T + AY    G PFSA+GE  FL IQ  ++ A 
Sbjct: 48  PQIMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVAC 107

Query: 357 VLHYGG-APMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYK 533
           + +Y    P+   I   +YCA+   +++G  +  +   + A    I L A+  QI  N+K
Sbjct: 108 IYYYSQPVPVTTWIRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFK 167

Query: 534 NGSTGQLSFITCFLLFGGSVXRIFTSIQETGDSIIILTYCVSTIANGAIV 683
           N STG+LSF+T F+ F GS+ R+FTS+QE     I+  + +  + NG+I+
Sbjct: 168 NKSTGELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVTNGSIL 217


>At5g59470.1 68418.m07453 PQ-loop repeat family protein /
           transmembrane family protein similar to SP|Q60441
           Mannose-P-dolichol utilization defect 1 protein
           (Suppressor of Lec15 and Lec35 glycosylation mutation)
           (SL15) {Cricetulus griseus}; contains Pfam profile
           PF04193: PQ loop repeat
          Length = 239

 Score =  109 bits (263), Expect = 1e-24
 Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
 Frame = +3

Query: 177 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 356
           PQI KI+ +KS +G+++    LE+   T + AY      PFSA+GE  FL IQ A+I   
Sbjct: 48  PQIMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQ-ALILVA 106

Query: 357 VLHYGGAPMKGGIFLS--VYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNY 530
            ++Y   P+    ++   +Y AI   + +G     +   + A    I L A+  QI  N+
Sbjct: 107 CIYYFSQPLSVTTWVKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFLSARIPQIWKNF 166

Query: 531 KNGSTGQLSFITCFLLFGGSVXRIFTSIQETGDSIIILTYCVSTIANGAIV 683
           +N STGQLSF+TC + FGG++ R+FTSIQE     ++L   +S   NG I+
Sbjct: 167 RNKSTGQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTNGIIM 217


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 485 SYHSHSQVNPNRNELQKWQHWSTVVYNLLPVVWR*CXKNLHINSRNWRLHYYSDLLC 655
           S+HS S  NP  ++   W+H    + N+ PV    C   + + S   RL   SD  C
Sbjct: 162 SHHSSSPSNPPHHQQNPWEHIERCMINMGPVGM--CRMQMEV-SFYTRLFQVSDYCC 215


>At3g44830.1 68416.m04830 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           lecithin:cholesterol acyltransferase [Rattus norvegicus]
           GI:2306762; contains Pfam profile PF02450:
           Lecithin:cholesterol acyltransferase
           (phosphatidylcholine-sterol acyltransferase)
          Length = 665

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 545 WSTVVYNLLPVVWR*CXKNLHINSRNWRLHYYS 643
           W+ ++ NL  + +    KNLH+ S +WRL +++
Sbjct: 174 WAVLIENLAKIGYE--GKNLHMASYDWRLSFHN 204


>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
           subunit (GGT-IB) nearly identical to GI:11878247
          Length = 375

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +3

Query: 372 GAPMKGGIFLSVYCAIVSVLVSGYTSTDILW--TMQAVTVPIILIAKSIQIGTNYKNGST 545
           G+   GG   + YCAI S+ + GY   D+L   +  ++  P +L+   +Q   N   G  
Sbjct: 228 GSESHGG---ATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQAN-DGGFQ 283

Query: 546 GQLS--FITCFLLFGGSVXRI 602
           G+ +    TC+  + G+V ++
Sbjct: 284 GRTNKPSDTCYAFWIGAVLKL 304


>At5g06680.1 68418.m00754 tubulin family protein similar to
           SP|Q96CW5 Gamma-tubulin complex component 3 {Homo
           sapiens}
          Length = 838

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 184 FSKFYKVRVPKESIFMEFIWSCLLSLRTLLIAM*WVSHSVHGV 312
           FS  Y+ RVP +++F E + S  L +   L  +  V H++ G+
Sbjct: 580 FSLEYEARVPLDTVFTESVLSKYLRVFNFLWKLKRVEHALIGI 622


>At1g62935.1 68414.m07106 hypothetical protein
          Length = 176

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 552 LSFITCFLLFGGSVXRIFTSIQETGDSIIILTYCVSTIANGAIVYK 689
           L F  C +LF   + R  +  +ETGD  ++ T+    + +G I+ K
Sbjct: 35  LFFFLCTILFLLIIDRNRSVYEETGDFYVLYTFQEDNMLDGEIIDK 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,347
Number of Sequences: 28952
Number of extensions: 335907
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)