Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P08
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 116 2e-27
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 46 3e-06
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 42 6e-05
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 29 0.56
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 29 0.56
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 28 0.73
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 1.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 3.0
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 25 6.8
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 116 bits (280), Expect = 2e-27
Identities = 53/113 (46%), Positives = 74/113 (65%)
Frame = +1
Query: 154 YTXXPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVG 333
+T PCP+ IL+D ++HSIKG+RN+P G K + ++AA K R+P++G
Sbjct: 6 HTRDPCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPG--EKRISAIAAAKTRAPVLG 63
Query: 334 GNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
GNF VWGG+FST DC++ +R+KEDPWN+I++G TGG LA R G A A
Sbjct: 64 GNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGA 116
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 46.4 bits (105), Expect = 3e-06
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +1
Query: 283 KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAAR 462
++ G L V R P VG + V +++ I+ + Y RQK NS+ +GALTG + +
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKST 178
Query: 463 NGVPAMAGSA 492
G+ AMA S+
Sbjct: 179 RGLRAMAISS 188
>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 316 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAM 480
RS NF + G ++S +C + R K D +N+I +G TGG LA R+G A+
Sbjct: 99 RSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAI 153
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 370 W*RTYHPKQQNYPRLLESAPLLQPNCQAFF 281
W TY K +NYP L+ PLL + +F
Sbjct: 211 WNATYATKSENYPNLVLPGPLLVTSMLEYF 240
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 407 IHGIPL*VEPSRGVSWLQEMVYRQWQEVHLLEEFS 511
I I + +PSRG +W Q ++ Q +E+HL E S
Sbjct: 259 IDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEES 293
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -2
Query: 386 TSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPSGAF 258
+ E ++ + PP TAK P ++ E + + AKLP++ L+ SG F
Sbjct: 169 SQEYTLDKLSPPSTAKPPASVIEFNPSLAKLPTVKYLQ-SGPF 210
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 510 ENSSNKCTSCHCRYTISCSQDTPRE--GSTHNGIPWIFLLPHVH 385
+N K HC + C ++ P E GS H P +F++PH H
Sbjct: 133 KNCLQKWLENHCTCPL-CRKEVPHETVGSAHP--PILFIIPHSH 173
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 373 LW*RTYHPKQQNYPRLLESAP 311
+W + PK NYP LLES+P
Sbjct: 908 IWDQRLLPKIVNYPPLLESSP 928
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 265 PLGFSRKMLGSLAAV-KERSPIVGGNFAVWGGMFSTIDCSLVYMRQK 402
P G+ +G L + ++ + +V F V + S +DCS ++RQK
Sbjct: 224 PFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQK 270
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 201 CVYNGSDRWWTISFDKRFQKRTTRLQ*KNAWQFGCSKGALSN 326
C+ + + + + KR+QK T+ + K+ W+ +K SN
Sbjct: 326 CMNQAEETFASCGYLKRYQKTKTKTRAKSTWKI-ANKSVYSN 366
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 418 NSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPL 308
N ++ P+ C QV + YH K + RL S PL
Sbjct: 35 NGVESPYYICVQVENQGIEVYHMKDE---RLFASCPL 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,901
Number of Sequences: 5004
Number of extensions: 44659
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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