Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P08
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 118 4e-27
03_04_0070 + 17042509-17043129 108 3e-24
03_04_0073 + 17059358-17059921 41 7e-04
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 33 0.18
01_06_1476 + 37640278-37642551 31 0.56
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926... 30 0.98
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 30 0.98
12_01_0231 + 1744323-1745276,1745516-1746193 30 1.3
11_01_0234 + 1804581-1805357,1805941-1806447 30 1.3
07_01_0422 + 3220988-3221536 30 1.3
03_04_0072 + 17054137-17054499 29 1.7
11_01_0233 + 1801011-1802081 29 2.3
12_01_1115 - 11904334-11904500,11905196-11905196,11905356-119055... 28 4.0
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 28 5.2
06_03_0494 - 21407798-21408142,21408238-21408333,21408854-214096... 27 6.9
01_01_1230 - 9936226-9936706,9938145-9938200,9939145-9939233,994... 27 6.9
05_04_0292 + 19893895-19894983 27 9.1
02_02_0649 - 12629402-12629685,12632347-12632530 27 9.1
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 118 bits (283), Expect = 4e-27
Identities = 56/107 (52%), Positives = 71/107 (66%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD LFH +KG N+P G +++G AV+ +P VGG+FA
Sbjct: 10 PCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRVGGSFA 67
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAG 486
VWGG+FS DC++V+MRQKEDPWNSI++GA TGG L+ R G P AG
Sbjct: 68 VWGGLFSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQG-PGAAG 113
Score = 111 bits (266), Expect = 4e-25
Identities = 54/106 (50%), Positives = 68/106 (64%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD FH +KG RN+P G + G + V+ +P V G FA
Sbjct: 234 PCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGGFA 291
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMA 483
VW G+FS DC+LV +RQKEDP+NSI++GA TGGILAAR G+ A+A
Sbjct: 292 VWCGLFSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGLRAVA 337
>03_04_0070 + 17042509-17043129
Length = 206
Score = 108 bits (259), Expect = 3e-24
Identities = 52/109 (47%), Positives = 66/109 (60%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD FH ++G N+P G ++ G AV+ P GGNFA
Sbjct: 8 PCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG--HRLSGGSQAVRMSVPRTGGNFA 65
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
WGG+FS DC++V+ RQKEDPWNSI++GA TG +L+ R G A A SA
Sbjct: 66 AWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPRATATSA 114
>03_04_0073 + 17059358-17059921
Length = 187
Score = 40.7 bits (91), Expect = 7e-04
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
P P +LD++ L H G R+ P G R + G+ AV++ +P + +A
Sbjct: 8 PYPDCVLDNAGAGFVGGAAAGTLAHLFTGLRDFPCG--RHLAGAAQAVRDGAPCLATRWA 65
Query: 346 VWGGMFSTIDCSLVYMRQK-EDPWNSIMSGALTGGILAARNGVPAMAGSA 492
++S +L + +DP S+ +GA TG + R+G P G A
Sbjct: 66 ARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVARLRHG-PLAVGRA 114
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -2
Query: 500 PISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPT 327
P+ LP+++G P + +PP+ P+ M+ GSS +M Q ++ QT + PP+
Sbjct: 567 PLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLIG--MNQTHQGPPS 622
>01_06_1476 + 37640278-37642551
Length = 757
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 462 SCSQDTPREGSTHNGIPWI 406
S D PR G+ HNGIPW+
Sbjct: 320 SAGNDGPRLGTLHNGIPWL 338
>12_02_0523 +
19988949-19989234,19992420-19992484,19992570-19992642,
19992765-19992818,19993532-19993761
Length = 235
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 340 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 444
FAV G+ S + C+L +R K+D N+ ++G TG
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTG 153
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -2
Query: 449 IPPVRA-PLIMEFHGSSFC 396
IPPVR P+++ FHG SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 464 FLAARIPPVRAPLIMEFHGSSFCLMYTS 381
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTTPAGRRPVLVHFHGGGFCLSHAA 110
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 464 FLAARIPPVRAPLIMEFHGSSFCLMYTS 381
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTAPARRRPVLVHFHGGGFCLSHAA 110
>07_01_0422 + 3220988-3221536
Length = 182
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 241 SIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 414
+++ F G +RK G AA + P+ N+ + + DC ++ R+ DPW
Sbjct: 90 TLEAFPEVVYGEARKARGGAAATQTCCPVCLENYGDGDVLRALPDCGHLFHRECVDPW 147
>03_04_0072 + 17054137-17054499
Length = 120
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 400 KEDPWNSIMSGALTGGILAARNG 468
KE+ WN + +GA T G L R G
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQG 30
>11_01_0233 + 1801011-1802081
Length = 356
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 467 PFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKL 336
P AA P R PL++ HG FCL S P AKL
Sbjct: 78 PPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALYHNFYAPLAAKL 121
>12_01_1115 -
11904334-11904500,11905196-11905196,11905356-11905508,
11905559-11905969
Length = 243
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 406 DPWNSIMSGALTGGILAARNGVPAMAGSA 492
DPW + G+ +GG+ R G PA A SA
Sbjct: 94 DPWPATTGGSRSGGVHCGR-GFPATAASA 121
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 387 VHEAKGRSMEFHYEWSPHGG 446
+HE KG S+ H SPHGG
Sbjct: 35 LHEDKGFSLSLHGSASPHGG 54
>06_03_0494 -
21407798-21408142,21408238-21408333,21408854-21409670,
21410211-21410363,21410506-21410744
Length = 549
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 512 KRIPPISALPAIAGTPFLAARIPPVRAPLIMEF 414
+R+P +ALP + P LAA P V A L ++
Sbjct: 43 RRVPGPAALPVVGHLPLLAAHGPDVFAVLAKKY 75
>01_01_1230 -
9936226-9936706,9938145-9938200,9939145-9939233,
9940820-9940923,9943756-9943931,9945130-9945713,
9947441-9947513
Length = 520
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Frame = +3
Query: 438 HGGY-PGCKKWCTGNGRKCTYW 500
HG Y GC W + G C YW
Sbjct: 495 HGRYFYGCGNWTSTRGANCDYW 516
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 479 IAGTPFLAARIPPV-----RAPLIMEFHGSSFCLMYTS 381
+ G P L +P V R P++++ HG FC+ + S
Sbjct: 77 LPGEPNLRVYLPEVALAERRLPVVVQLHGGGFCISHPS 114
>02_02_0649 - 12629402-12629685,12632347-12632530
Length = 155
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = -1
Query: 501 SNKCTSCHCRYTISCSQDTPREGSTHNGIPWIFLLPHVHK*AVYGREHTTPNSKITPDYW 322
S++ SC R S Q + G TH+G+ + + P G HT P
Sbjct: 98 SDRWESCLARPISSFHQHCTKRGDTHSGVKFTYSKPS-------GNSHTVKTFLYKPA-- 148
Query: 321 RALLYCS 301
A LYCS
Sbjct: 149 NAPLYCS 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,497
Number of Sequences: 37544
Number of extensions: 323030
Number of successful extensions: 823
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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