Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P08
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)              78   4e-15
SB_28405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)           27   7.1  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.4  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)
          Length = 289

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 35/52 (67%), Positives = 40/52 (76%)
 Frame = +1

Query: 337 NFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
           NFAVWGG+FST DC L+ +R KEDPWNSI SGA+TG +LAAR G  A   SA
Sbjct: 171 NFAVWGGLFSTFDCCLMGLRGKEDPWNSIGSGAITGAVLAARGGPSAAMRSA 222



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 139 YIMDXYTXXPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPL 270
           Y M+ Y   PCP+RI+DD             +F  +KG+RN+P+
Sbjct: 20  YKMEEYAREPCPYRIVDDCGGAFAMGAIGGGIFSLVKGWRNSPV 63


>SB_28405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 316 APLLQPNCQAFF-Y*SLVVRF*NLLSNEIVHHR 221
           +P  Q N + FF Y S + RF N+  NE+ H+R
Sbjct: 56  SPWYQANGKCFFLYFSGISRFSNIRENEVTHNR 88


>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
          Length = 721

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -1

Query: 504 SSNKCTSCHCRYTISCSQDTPREGSTHNGIPWIFLLPHVHK*AVYGREHTTPNSKITPDY 325
           S+ KC +C   + +S  Q+ P   +  NG         +H+     R  +TPN+   PD 
Sbjct: 178 SNQKCGNCGLAHDLSKRQNCPAYNTKCNGCN------KLHRWQRACRSKSTPNAPPRPDK 231

Query: 324 W 322
           W
Sbjct: 232 W 232


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 297  FGCSKGALSNSRG*FCCLGWYVLYHRL 377
            FGC  G+ S++   +CCLG   + H L
Sbjct: 960  FGCRPGSESHAGQIYCCLGALSITHSL 986


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -2

Query: 473 GTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTA 303
           GTP L   +P ++  L  +F   +F     S   + + IPP      P I     T+
Sbjct: 192 GTPNLRNTLPNIKELLATKFRARTFNFRLVSVDLLFQRIPPYPCNHLPCIASADPTS 248


>SB_18195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 521 IRXKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTA 342
           +R   I   S LPA      L  + P  R  L+ ++H      +   E+SMV +    + 
Sbjct: 67  VRMDDIKTNSTLPARVAIALLMNKRPDSRLDLLSKYHPDCDLDLSAGERSMVRSWAEISV 126

Query: 341 KLPPTIGERSF 309
            L P   +R++
Sbjct: 127 ILRPRSSQRTY 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,280
Number of Sequences: 59808
Number of extensions: 361291
Number of successful extensions: 893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)