Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P08
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical ... 116 1e-26
U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical p... 68 5e-12
Z49125-3|CAB97233.1| 213|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 31 0.38
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 28 3.5
AC006714-5|AAN84811.1| 224|Caenorhabditis elegans Hypothetical ... 28 3.5
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 27 8.1
>AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical
protein E04A4.5 protein.
Length = 181
Score = 116 bits (279), Expect = 1e-26
Identities = 57/116 (49%), Positives = 74/116 (63%)
Frame = +1
Query: 145 MDXYTXXPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 324
M+ YT PCP+RI DD +F + G++NA G +K++G + V+ RS
Sbjct: 1 MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRST 58
Query: 325 IVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
+ G FA WGGMFSTIDC LV +R+KEDP NSI+SG LTG +LA R+G MAGSA
Sbjct: 59 LTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSA 114
>U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical
protein D2096.1 protein.
Length = 158
Score = 67.7 bits (158), Expect = 5e-12
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +1
Query: 316 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARN 465
RS + G FA WGG+FSTIDC LV R+KED NSI+SG LTG +LA R+
Sbjct: 2 RSTLAGVQFAAWGGLFSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRS 51
>Z49125-3|CAB97233.1| 213|Caenorhabditis elegans Hypothetical
protein C47G2.3 protein.
Length = 213
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 307 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV-PAMA 483
+ R G NF G MFS +C+L +R K D N SG + GG+L R G+ PA+
Sbjct: 136 MSSRMKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGIMPAVW 195
Query: 484 GSA 492
G+A
Sbjct: 196 GAA 198
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -2
Query: 503 PPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTI 324
P ++++P P +IPP P++ + + + +PP T LPPT+
Sbjct: 30 PNVNSVPVQNPNP---NQIPPAPRPIVNQIQYPKPTNPVQNPNKLSTGLPPMTMMLPPTV 86
Query: 323 GERSFTAAKLPSI 285
E T K P +
Sbjct: 87 QEPLPTPVKTPPL 99
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 207 YNGSDRWWTISFDKRFQKRTTRL 275
Y SD+ W + F+KRF +R R+
Sbjct: 71 YKNSDKKWRMGFEKRFLERIRRI 93
>AC006714-5|AAN84811.1| 224|Caenorhabditis elegans Hypothetical
protein Y119D3B.12b protein.
Length = 224
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 207 YNGSDRWWTISFDKRFQKRTTRL 275
Y SD+ W + F+KRF +R R+
Sbjct: 71 YKNSDKKWRMGFEKRFLERIRRI 93
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 398 CLMYTSEQSMVENIPPQTAKLPPTI 324
C+M+ + Q E I PQTA PP +
Sbjct: 982 CMMFHNRQGCEECICPQTAPTPPHV 1006
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 6 VVFRLLLPLCSVIQPPILHIKVVCAPFLXAGLKXNXHKFEL*KLIYHGXIYKXTMP 173
V +R+L+ LC P + +KV+ A AGL+ N + IYH + T P
Sbjct: 992 VCYRILIELCGKYSEPEMAVKVMRA-MQRAGLEQNAVTYG----IYHRAVMDATWP 1042
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 477 CRYTISCSQDTPREGSTHNGIP 412
C T+SC D P E S +N +P
Sbjct: 42 CYQTLSCPSDLPVETSYYNSVP 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,966
Number of Sequences: 27780
Number of extensions: 260120
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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