Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P08
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 414 EFHYEWSPHGGYPGCKKWCTGNG 482
           E H EW  +   PG  KW   +G
Sbjct: 558 ENHIEWFDYAFIPGNLKWLDIHG 580


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 449 IPPV-RAPLIMEFHGSSFCLM 390
           +PP  + PLI  ++G S CL+
Sbjct: 266 LPPTEKTPLISLYYGVSICLV 286


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 423 NGIPWIFLLPHVHK*AVYG 367
           NGIPW+ +L H  +  ++G
Sbjct: 85  NGIPWV-ILGHSERRNIFG 102


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 KRFQKRTTRLQ*KNAW 293
           K+FQK TT L+   +W
Sbjct: 347 KQFQKNTTGLERSRSW 362


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 441 REGSTHNGIPWI 406
           R  STHN  PW+
Sbjct: 339 RSPSTHNMSPWV 350


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 389 YTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPS 267
           + S Q+     PP  ++ PP  G      ++ PS  ++ P+
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,097
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)