Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P08
(522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 116 1e-26
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 116 1e-26
At1g20350.1 68414.m02539 mitochondrial import inner membrane tra... 113 7e-26
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra... 90 1e-18
At3g10110.1 68416.m01211 mitochondrial import inner membrane tra... 40 8e-04
At1g18320.1 68414.m02289 mitochondrial import inner membrane tra... 40 8e-04
At1g17530.1 68414.m02155 mitochondrial import inner membrane tra... 37 0.007
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 34 0.067
At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ... 31 0.47
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 30 1.1
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 29 1.4
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra... 28 3.3
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 28 3.3
At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta... 28 3.3
At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta... 28 3.3
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 4.4
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 27 5.8
At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta... 27 7.7
At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta... 27 7.7
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi... 27 7.7
At3g62880.1 68416.m07064 mitochondrial import inner membrane tra... 27 7.7
At1g64790.1 68414.m07346 translational activator family protein ... 27 7.7
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 116 bits (278), Expect = 1e-26
Identities = 55/109 (50%), Positives = 69/109 (63%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD FH IKG N+P G + +G +V +P GG+FA
Sbjct: 10 PCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFA 67
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
VWGG+FST DC++VY+RQKEDPWNSI++GA TGG L+ R G A + SA
Sbjct: 68 VWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSA 116
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 116 bits (278), Expect = 1e-26
Identities = 55/109 (50%), Positives = 69/109 (63%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD FH IKG N+P G + +G +V +P GG+FA
Sbjct: 10 PCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFA 67
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
VWGG+FST DC++VY+RQKEDPWNSI++GA TGG L+ R G A + SA
Sbjct: 68 VWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSA 116
>At1g20350.1 68414.m02539 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 218
Score = 113 bits (272), Expect = 7e-26
Identities = 54/109 (49%), Positives = 70/109 (64%)
Frame = +1
Query: 166 PCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 345
PCP RILDD +H I+G N+P G ++ G + A++ P GG+F+
Sbjct: 10 PCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGG--ARLSGGVQALRMSGPRSGGSFS 67
Query: 346 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 492
VWGG++ST DC+LVY RQKEDPWNSI+SGA TGG L+ R G+ A A SA
Sbjct: 68 VWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSA 116
>At5g11690.1 68418.m01366 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 133
Score = 89.8 bits (213), Expect = 1e-18
Identities = 41/87 (47%), Positives = 61/87 (70%)
Frame = +1
Query: 232 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 411
++H ++G N+P+G + +G A +P +GG FAV+GG+ ST D +LV +R+KEDP
Sbjct: 32 VYHFVRGAYNSPIG--ARYVGGTQAASMNAPRLGGTFAVFGGLLSTFDYALVRIRKKEDP 89
Query: 412 WNSIMSGALTGGILAARNGVPAMAGSA 492
WNSI++GA TGG+L+ R GV A + SA
Sbjct: 90 WNSIVAGAATGGVLSIRKGVVAASTSA 116
>At3g10110.1 68416.m01211 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to TIM22 preprotein translocase [Rattus
norvegicus] GI:6760457; contains Pfam profile PF02466:
Mitochondrial import inner membrane translocase subunit
Tim17
Length = 173
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 340 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 477
FAV G +FS +C + R K D N+ ++G +TGG ++AR G A
Sbjct: 105 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 150
>At1g18320.1 68414.m02289 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam domain PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 129
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 340 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 477
FAV G +FS +C + R K D N+ ++G +TGG ++AR G A
Sbjct: 61 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 106
>At1g17530.1 68414.m02155 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 187
Score = 37.1 bits (82), Expect = 0.007
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 232 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 411
+F IK F N K+ L + + G + G +++ I+ +V + K+D
Sbjct: 79 IFSGIKSFENGDTT-KLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDV 137
Query: 412 WNSIMSGALTGGILAARNGVPAMA 483
W S+++G TG + A GV + A
Sbjct: 138 WTSVVAGLGTGAVFRAARGVRSAA 161
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 33.9 bits (74), Expect = 0.067
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 307 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG-GILA 456
V+E + +G F + G + + C L R+KE P NS+++G++ G ILA
Sbjct: 124 VREEACRIGLLFGGFTGSYHALRCCLRKWRKKETPLNSVLAGSVAGLSILA 174
>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
similarity to SP|O22160 Thylakoid lumenal 15 kDa
protein, chloroplast precursor (p15) {Arabidopsis
thaliana}; contains Pfam profile PF00805: Pentapeptide
repeats (8 copies)
Length = 280
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 400 KEDPWNSIMSGALTGGILAARNGVPAMA 483
+ + W I+S A+ ++A+ +GVPAMA
Sbjct: 63 ESNTWKRILSAAMAAAVIASSSGVPAMA 90
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 467 PFLAARIPPVRAPLIMEFHGSSFCL 393
P AA P V PL++ FHG FC+
Sbjct: 81 PDAAAASPSVTLPLLVYFHGGGFCV 105
>At5g55510.1 68418.m06914 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q99595 Mitochondrial import inner
membrane translocase subunit TIM17 A {Homo sapiens};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 186
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 340 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGS 489
FAV G+ S + C L +R K+D N ++G TG L+ AM S
Sbjct: 63 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQS 112
>At4g26670.1 68417.m03842 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q9Z0V8 Mitochondrial import inner
membrane translocase subunit TIM17 A {Mus musculus};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 210
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 340 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 444
FAV G+ S + C L +R K+D N ++G TG
Sbjct: 91 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 437 RAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPS 288
R +++FH S+ Q + K+PP+ RS++AAK+PS
Sbjct: 421 RCTRLLQFHKESWGEEEQVVQLRQSRVLHSIEKIPPSGAGRSYSAAKVPS 470
>At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 297 FGCSKGALSNSRG*FCCLG 353
FGCS GA S++ FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188
>At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 297 FGCSKGALSNSRG*FCCLG 353
FGCS GA S++ FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 433 LHS*WNSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPLLQPN--CQAFF 281
LH + S DLP + + L TY P +Y L PLLQPN QA F
Sbjct: 473 LHEEFASYDLPHGNLKSSNVLLSETYEPLISDYAFL----PLLQPNNASQALF 521
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +3
Query: 303 CSKGALSNSRG*FCCLGWYVLYHRLLTCVHEAKGRSMEFHYEW--SP--HGGYPGCKKWC 470
C K + G W+ YH T EA R++ F W P HG YP K
Sbjct: 251 CEKTSHDGQIGIVLSPRWFEPYHSDSTDDKEAAERALAFEIGWHLDPVIHGDYPEIVKKY 310
Query: 471 TGN 479
GN
Sbjct: 311 AGN 313
>At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 320
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 297 FGCSKGALSNSRG*FCCLG 353
FGC+ GA S++ FCC+G
Sbjct: 174 FGCTPGAESHAGQIFCCVG 192
>At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 321
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 297 FGCSKGALSNSRG*FCCLG 353
FGC+ GA S++ FCC+G
Sbjct: 175 FGCTPGAESHAGQIFCCVG 193
>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 857
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 334 GNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGIL 453
G+F+ G MF +D +R PWNSI+S + G+L
Sbjct: 84 GSFSDCGKMFYRLDLRRSSIR----PWNSIISSFVRNGLL 119
>At3g62880.1 68416.m07064 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains PFam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 136
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 355 GMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILA 456
G+F+ C L R K D N+++ GA+ G +A
Sbjct: 68 GVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVA 101
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 386 TSEQSMVENIPPQTAKLPPTIGER---SFTAAKLPS-IFLLKPSGAFLKPF 246
TSEQ++ E + P T L IG+R +A L + I L++ G LKPF
Sbjct: 2072 TSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRGGMALKPF 2122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,714
Number of Sequences: 28952
Number of extensions: 247188
Number of successful extensions: 570
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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