Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P06
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               361   e-100
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.1  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   5.5  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   7.2  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   7.2  
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)                     28   7.2  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  361 bits (888), Expect = e-100
 Identities = 170/194 (87%), Positives = 185/194 (95%)
 Frame = +3

Query: 144 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 323
           A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KRFRKAQCPIVE
Sbjct: 79  APEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVE 138

Query: 324 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 503
           R+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGR
Sbjct: 139 RITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGR 198

Query: 504 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAI 683
           AGTVRRQAVDVSPLRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAI
Sbjct: 199 AGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAI 258

Query: 684 KKKDXLERVAKSNR 725
           KKKD LERVAKSNR
Sbjct: 259 KKKDELERVAKSNR 272



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +3

Query: 144 AADIPEIKLFGRWSCYDVQVSDMSL 218
           A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 16  APEVPDIKLFGKWSTEDVQVSDISL 40


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 653  CIN*FICNTLCDCFNISECSLTCTC 579
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 615 TIAECVADELINAAKGSSNSY--AIKKKDXLERVAK 716
           T  +C+ DEL +  +G  NSY   +K+K+ LER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 635 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 546
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 153 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 284
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
          Length = 145

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 1  AFSRCLLTVRGYHFSLVIXKSQSWPRSTGM 90
          AFSR L TV    F  V  +  +WP + GM
Sbjct: 8  AFSRILRTVSEQKFGCVFFEKPAWPPTRGM 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,316,723
Number of Sequences: 59808
Number of extensions: 515532
Number of successful extensions: 1228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)