Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P06
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 315 2e-86
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 313 1e-85
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 313 1e-85
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 29 3.4
At4g39450.1 68417.m05582 expressed protein 29 4.5
At1g59590.1 68414.m06702 expressed protein 29 4.5
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 315 bits (774), Expect = 2e-86
Identities = 152/190 (80%), Positives = 172/190 (90%), Gaps = 1/190 (0%)
Frame = +3
Query: 159 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 335
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 336 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 515
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 516 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKD 695
RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
Query: 696 XLERVAKSNR 725
+ERVAK+NR
Sbjct: 198 EIERVAKANR 207
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 313 bits (768), Expect = 1e-85
Identities = 152/196 (77%), Positives = 174/196 (88%), Gaps = 1/196 (0%)
Frame = +3
Query: 141 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 317
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 497
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 498 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 677
G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191
Query: 678 AIKKKDXLERVAKSNR 725
AIKKKD +ERVAK+NR
Sbjct: 192 AIKKKDEIERVAKANR 207
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 313 bits (768), Expect = 1e-85
Identities = 152/196 (77%), Positives = 174/196 (88%), Gaps = 1/196 (0%)
Frame = +3
Query: 141 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 317
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 497
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 498 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 677
G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191
Query: 678 AIKKKDXLERVAKSNR 725
AIKKKD +ERVAK+NR
Sbjct: 192 AIKKKDEIERVAKANR 207
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 273
P + W+ WK L + PP L GV + +S + +T P KR +N+ ++ L
Sbjct: 795 PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850
Query: 274 AGMHTSVSVKPSAQSWSALQTL 339
G H + P + +AL+ L
Sbjct: 851 RGCH-GLEAIPDLSNHNALEKL 871
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +3
Query: 531 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 674
DVSPL + IWL T ARE + + I +A E I AA S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455
>At1g59590.1 68414.m06702 expressed protein
Length = 211
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 657 KGSSNSYAIKKKDXLERVAKSNR 725
+GSS SYA+KKKD +++ NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,352
Number of Sequences: 28952
Number of extensions: 340548
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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