Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P05
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    30   0.17 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   2.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   3.7  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   6.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.5  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 IRETLVITPTYITLFNRCIFYCFALIMSVII*CAYHYFL 389
           +R   V  P+   + NR + + FAL++S+ I C   YF+
Sbjct: 558 VRNVSVKAPSMQKVTNRIVIFIFALVVSMAIYCTAAYFV 596


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 101 LAFLPAKNSAALTENITNANTIIKRSVIKKKKLFILHFCISCF 229
           L  L ++ +A++ E I   ++++ R    KKK+  LH C + F
Sbjct: 45  LTTLISQENASMDEKIEKIDSLLSRVSTVKKKMKHLHDCEALF 87


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 35   NAMSIGKRPSCL*KTVAATGFPLAFLPAKNSAALTENITNANTIIKRSVIKKK 193
            +A S+ + P  L   +AA+G P AF+   ++ + + ++TN +   K S+I  K
Sbjct: 1589 SAGSVEREPLFL---IAASGSPHAFIWNPHNVSASSSVTNDSESSKLSLIHNK 1638


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 316 NNVM*VGVITNVSLILRHIPLPSNNCYK 233
           +N+  +G ++  SL L HIP P N   K
Sbjct: 241 SNIAPMGTLSKSSLPLHHIPWPPNQHIK 268


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 282 SLLFYDIFRCHRTTATN*KQLIQ 214
           S+  YDIFR +   A N KQL++
Sbjct: 372 SVTTYDIFRAYINPAANGKQLVR 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,321
Number of Sequences: 5004
Number of extensions: 29959
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)